Variant report

Variant	rs10735993
Chromosome Location	chr12:41800488-41800489
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1026464	0.86[ASN][1000 genomes]
rs10735994	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10735995	0.87[EUR][1000 genomes]
rs10785264	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10785265	0.92[ASN][1000 genomes]
rs1379768	0.92[ASN][1000 genomes]
rs1379769	0.91[ASN][1000 genomes]
rs1458156	0.84[ASN][1000 genomes]
rs1458157	0.84[ASN][1000 genomes]
rs1458160	0.86[ASN][1000 genomes]
rs1471161	0.91[ASN][1000 genomes]
rs2034923	0.83[ASN][1000 genomes]
rs2199028	0.86[ASN][1000 genomes]
rs2250003	0.91[ASN][1000 genomes]
rs2253528	0.81[ASN][1000 genomes]
rs2253634	0.86[ASN][1000 genomes]
rs2264905	0.90[ASN][1000 genomes]
rs2405920	0.91[ASN][1000 genomes]
rs2468315	0.90[ASN][1000 genomes]
rs2468316	0.91[ASN][1000 genomes]
rs2608702	0.90[ASN][1000 genomes]
rs2608711	0.91[ASN][1000 genomes]
rs2608714	0.91[ASN][1000 genomes]
rs2608716	0.81[ASN][1000 genomes]
rs2730803	0.84[ASN][1000 genomes]
rs2730814	0.86[ASN][1000 genomes]
rs2730827	0.86[ASN][1000 genomes]
rs2730830	0.91[ASN][1000 genomes]
rs2733269	0.85[ASN][1000 genomes]
rs2733276	0.85[ASN][1000 genomes]
rs2733280	0.84[ASN][1000 genomes]
rs2733287	0.84[ASN][1000 genomes]
rs2733289	0.89[ASN][1000 genomes]
rs2733290	0.91[ASN][1000 genomes]
rs2733292	0.91[ASN][1000 genomes]
rs4768354	0.91[ASN][1000 genomes]
rs7133365	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7956499	0.87[EUR][1000 genomes]
rs981014	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832383	chr12:41693298-41846934	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
2	nsv832384	chr12:41772648-41971430	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv899036	chr12:41777144-41807859	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	n/a
4	nsv899037	chr12:41777144-41819215	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	n/a
5	nsv1044910	chr12:41778831-41813198	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	n/a
6	esv2761735	chr12:41780758-41811938	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	n/a
7	esv2757501	chr12:41780758-41816002	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	n/a
8	esv2759896	chr12:41780758-41816002	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	n/a
9	esv2755020	chr12:41780758-41820936	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	n/a
10	nsv899038	chr12:41784137-41819215	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	n/a
11	nsv818915	chr12:41784997-41811063	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	n/a
12	nsv899039	chr12:41784997-41813207	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	n/a
13	nsv1050627	chr12:41789891-41809009	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41797000-41800600	Weak transcription	Brain Anterior Caudate	brain
2	chr12:41800000-41800800	Enhancers	Fetal Brain Male	brain

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