Variant report

Variant	rs10735994
Chromosome Location	chr12:41800713-41800714
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 118 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:105)

rs_ID	r²[population]
rs10735993	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10735995	0.89[EUR][1000 genomes]
rs10785264	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10880073	0.84[ASN][1000 genomes]
rs10880075	0.88[ASN][1000 genomes]
rs10880076	0.91[ASN][1000 genomes]
rs1155220	0.91[ASN][1000 genomes]
rs1160183	0.91[ASN][1000 genomes]
rs1160184	0.91[ASN][1000 genomes]
rs1160748	0.91[ASN][1000 genomes]
rs1160749	0.91[ASN][1000 genomes]
rs12314238	0.91[ASN][1000 genomes]
rs1350429	0.91[ASN][1000 genomes]
rs1350430	0.91[ASN][1000 genomes]
rs1379758	0.83[ASN][1000 genomes]
rs1379759	0.83[ASN][1000 genomes]
rs1379760	0.83[ASN][1000 genomes]
rs1379761	0.82[ASN][1000 genomes]
rs1379763	0.82[ASN][1000 genomes]
rs1379764	0.83[ASN][1000 genomes]
rs1379770	0.83[ASN][1000 genomes]
rs1379771	0.83[ASN][1000 genomes]
rs1379772	0.83[ASN][1000 genomes]
rs1379773	0.91[ASN][1000 genomes]
rs1379774	0.83[ASN][1000 genomes]
rs1379775	0.84[ASN][1000 genomes]
rs1379776	0.91[ASN][1000 genomes]
rs1458159	0.91[ASN][1000 genomes]
rs1458166	0.81[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs1458167	0.91[ASN][1000 genomes]
rs1458168	0.91[ASN][1000 genomes]
rs1471162	0.91[ASN][1000 genomes]
rs1471163	0.91[ASN][1000 genomes]
rs1551593	0.91[ASN][1000 genomes]
rs1551595	0.91[ASN][1000 genomes]
rs1551596	0.90[ASN][1000 genomes]
rs1598894	0.91[ASN][1000 genomes]
rs1841025	0.91[ASN][1000 genomes]
rs1870285	0.81[ASN][1000 genomes]
rs1870286	0.83[ASN][1000 genomes]
rs1902906	0.82[ASN][1000 genomes]
rs2125286	0.82[ASN][1000 genomes]
rs2125287	0.82[ASN][1000 genomes]
rs2250009	0.83[ASN][1000 genomes]
rs2250908	0.91[ASN][1000 genomes]
rs2251259	0.91[ASN][1000 genomes]
rs2251349	0.91[ASN][1000 genomes]
rs2251672	0.85[ASN][1000 genomes]
rs2251683	0.91[ASN][1000 genomes]
rs2251684	0.90[ASN][1000 genomes]
rs2255035	0.83[ASN][1000 genomes]
rs2255145	0.83[ASN][1000 genomes]
rs2255152	0.83[ASN][1000 genomes]
rs2255404	0.83[ASN][1000 genomes]
rs2405921	0.83[ASN][1000 genomes]
rs2446143	0.91[ASN][1000 genomes]
rs2446144	0.91[ASN][1000 genomes]
rs2468317	0.83[ASN][1000 genomes]
rs2608689	0.83[ASN][1000 genomes]
rs2608690	0.83[ASN][1000 genomes]
rs2608692	0.83[ASN][1000 genomes]
rs2608696	0.83[ASN][1000 genomes]
rs2608697	0.83[ASN][1000 genomes]
rs2608701	0.91[ASN][1000 genomes]
rs2608703	0.91[ASN][1000 genomes]
rs2608704	0.91[ASN][1000 genomes]
rs2608705	0.82[ASN][1000 genomes]
rs2608706	0.83[ASN][1000 genomes]
rs2608707	0.82[ASN][1000 genomes]
rs2608710	0.91[ASN][1000 genomes]
rs2608718	0.82[ASN][1000 genomes]
rs2730802	0.83[ASN][1000 genomes]
rs2730804	0.88[ASN][1000 genomes]
rs2730805	0.91[ASN][1000 genomes]
rs2730809	0.91[ASN][1000 genomes]
rs2730810	0.91[ASN][1000 genomes]
rs2730811	0.91[ASN][1000 genomes]
rs2730817	0.91[ASN][1000 genomes]
rs2730818	0.90[ASN][1000 genomes]
rs2730819	0.91[ASN][1000 genomes]
rs2730820	0.91[ASN][1000 genomes]
rs2730821	0.91[ASN][1000 genomes]
rs2730822	0.90[ASN][1000 genomes]
rs2730824	0.83[ASN][1000 genomes]
rs2730828	0.91[ASN][1000 genomes]
rs2730829	0.91[ASN][1000 genomes]
rs2733274	0.91[ASN][1000 genomes]
rs2733282	0.91[ASN][1000 genomes]
rs2733291	0.91[ASN][1000 genomes]
rs2733293	0.91[ASN][1000 genomes]
rs2733297	0.91[ASN][1000 genomes]
rs2733298	0.83[ASN][1000 genomes]
rs2733299	0.83[ASN][1000 genomes]
rs2957590	0.91[ASN][1000 genomes]
rs35766123	0.91[ASN][1000 genomes]
rs4584644	0.80[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs4768353	0.83[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs7133365	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7298808	0.91[ASN][1000 genomes]
rs7956499	0.89[EUR][1000 genomes]
rs897973	0.93[ASN][1000 genomes]
rs971998	0.91[ASN][1000 genomes]
rs981012	0.91[ASN][1000 genomes]
rs989904	0.80[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs996356	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832383	chr12:41693298-41846934	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
2	nsv832384	chr12:41772648-41971430	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv899036	chr12:41777144-41807859	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	n/a
4	nsv899037	chr12:41777144-41819215	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	n/a
5	nsv1044910	chr12:41778831-41813198	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	n/a
6	esv2761735	chr12:41780758-41811938	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	n/a
7	esv2757501	chr12:41780758-41816002	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	n/a
8	esv2759896	chr12:41780758-41816002	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	n/a
9	esv2755020	chr12:41780758-41820936	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	n/a
10	nsv899038	chr12:41784137-41819215	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	n/a
11	nsv818915	chr12:41784997-41811063	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	n/a
12	nsv899039	chr12:41784997-41813207	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	n/a
13	nsv1050627	chr12:41789891-41809009	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41800000-41800800	Enhancers	Fetal Brain Male	brain
2	chr12:41800600-41800800	Enhancers	Brain Angular Gyrus	brain
3	chr12:41800600-41800800	Enhancers	Brain Anterior Caudate	brain
4	chr12:41800600-41801200	Enhancers	Brain Substantia Nigra	brain
5	chr12:41800600-41801600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr12:41800600-41801800	Enhancers	Fetal Brain Female	brain
7	chr12:41800600-41802200	Enhancers	Cortex derived primary cultured neurospheres	brain

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