Variant report
Variant | rs7133365 |
---|---|
Chromosome Location | chr12:41801963-41801964 |
allele | A/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10506191 | 1.00[CEU][hapmap] |
rs10506192 | 1.00[CEU][hapmap] |
rs10735993 | 0.92[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs10735994 | 0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs10735995 | 0.96[CEU][hapmap];0.88[EUR][1000 genomes] |
rs10785235 | 1.00[CEU][hapmap] |
rs10785258 | 1.00[CEU][hapmap] |
rs10785261 | 1.00[CEU][hapmap] |
rs10785263 | 0.96[CEU][hapmap] |
rs10785264 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs10880054 | 1.00[CEU][hapmap] |
rs10880063 | 1.00[CEU][hapmap] |
rs10880067 | 1.00[CEU][hapmap] |
rs10880071 | 1.00[CEU][hapmap] |
rs10880073 | 0.88[ASN][1000 genomes] |
rs10880075 | 0.91[ASN][1000 genomes] |
rs10880076 | 0.81[YRI][hapmap];0.95[ASN][1000 genomes] |
rs11180836 | 1.00[CEU][hapmap] |
rs11180851 | 0.96[CEU][hapmap] |
rs11180863 | 1.00[CEU][hapmap] |
rs11180864 | 1.00[CEU][hapmap] |
rs11180878 | 1.00[CEU][hapmap] |
rs1155220 | 0.95[ASN][1000 genomes] |
rs1160183 | 0.95[ASN][1000 genomes] |
rs1160184 | 0.95[ASN][1000 genomes] |
rs1160748 | 0.95[ASN][1000 genomes] |
rs1160749 | 0.95[ASN][1000 genomes] |
rs11614231 | 1.00[CEU][hapmap] |
rs11835941 | 1.00[CEU][hapmap] |
rs12314238 | 0.95[ASN][1000 genomes] |
rs12369680 | 1.00[CEU][hapmap] |
rs12817575 | 1.00[CEU][hapmap] |
rs1350429 | 0.88[YRI][hapmap];0.95[ASN][1000 genomes] |
rs1350430 | 0.95[ASN][1000 genomes] |
rs1379758 | 0.86[ASN][1000 genomes] |
rs1379759 | 0.86[ASN][1000 genomes] |
rs1379760 | 0.86[ASN][1000 genomes] |
rs1379761 | 0.85[ASN][1000 genomes] |
rs1379763 | 0.85[ASN][1000 genomes] |
rs1379764 | 0.86[ASN][1000 genomes] |
rs1379770 | 0.86[ASN][1000 genomes] |
rs1379771 | 0.86[ASN][1000 genomes] |
rs1379772 | 0.86[ASN][1000 genomes] |
rs1379773 | 0.95[ASN][1000 genomes] |
rs1379774 | 0.86[ASN][1000 genomes] |
rs1379775 | 0.88[ASN][1000 genomes] |
rs1379776 | 0.95[ASN][1000 genomes] |
rs1405549 | 1.00[CEU][hapmap] |
rs1458159 | 0.95[ASN][1000 genomes] |
rs1458166 | 0.93[YRI][hapmap];0.95[ASN][1000 genomes] |
rs1458167 | 0.95[ASN][1000 genomes] |
rs1458168 | 0.94[ASN][1000 genomes] |
rs1458176 | 0.96[CEU][hapmap] |
rs1471162 | 0.95[ASN][1000 genomes] |
rs1471163 | 0.95[ASN][1000 genomes] |
rs1527090 | 1.00[CEU][hapmap] |
rs1534280 | 1.00[CEU][hapmap] |
rs1551593 | 0.81[YRI][hapmap];0.95[ASN][1000 genomes] |
rs1551595 | 0.95[ASN][1000 genomes] |
rs1551596 | 0.93[ASN][1000 genomes] |
rs1598894 | 0.95[ASN][1000 genomes] |
rs1841025 | 0.95[ASN][1000 genomes] |
rs1870285 | 0.84[ASN][1000 genomes] |
rs1870286 | 0.81[YRI][hapmap];0.86[ASN][1000 genomes] |
rs1902906 | 0.85[ASN][1000 genomes] |
rs1902907 | 1.00[CEU][hapmap] |
rs1902911 | 1.00[CEU][hapmap] |
rs2125286 | 0.85[ASN][1000 genomes] |
rs2125287 | 0.85[ASN][1000 genomes] |
rs2199030 | 1.00[CEU][hapmap] |
rs2250009 | 0.86[ASN][1000 genomes] |
rs2250908 | 0.95[ASN][1000 genomes] |
rs2251259 | 0.94[ASN][1000 genomes] |
rs2251349 | 0.95[ASN][1000 genomes] |
rs2251672 | 0.88[ASN][1000 genomes] |
rs2251683 | 0.95[ASN][1000 genomes] |
rs2251684 | 0.93[ASN][1000 genomes] |
rs2255035 | 0.86[ASN][1000 genomes] |
rs2255145 | 0.86[ASN][1000 genomes] |
rs2255152 | 0.86[ASN][1000 genomes] |
rs2255404 | 0.86[ASN][1000 genomes] |
rs2405921 | 0.86[ASN][1000 genomes] |
rs2446143 | 0.95[ASN][1000 genomes] |
rs2446144 | 0.95[ASN][1000 genomes] |
rs2468317 | 0.86[ASN][1000 genomes] |
rs2608689 | 0.86[ASN][1000 genomes] |
rs2608690 | 0.86[ASN][1000 genomes] |
rs2608691 | 0.80[ASN][1000 genomes] |
rs2608692 | 0.81[YRI][hapmap];0.86[ASN][1000 genomes] |
rs2608696 | 0.86[ASN][1000 genomes] |
rs2608697 | 0.81[YRI][hapmap];0.86[ASN][1000 genomes] |
rs2608701 | 0.95[ASN][1000 genomes] |
rs2608703 | 0.95[ASN][1000 genomes] |
rs2608704 | 0.95[ASN][1000 genomes] |
rs2608705 | 0.85[ASN][1000 genomes] |
rs2608706 | 0.86[ASN][1000 genomes] |
rs2608707 | 0.85[ASN][1000 genomes] |
rs2608708 | 0.83[ASN][1000 genomes] |
rs2608710 | 0.95[ASN][1000 genomes] |
rs2608718 | 0.86[ASN][1000 genomes] |
rs2730802 | 0.86[ASN][1000 genomes] |
rs2730804 | 0.91[ASN][1000 genomes] |
rs2730805 | 0.95[ASN][1000 genomes] |
rs2730809 | 0.95[ASN][1000 genomes] |
rs2730810 | 0.94[ASN][1000 genomes] |
rs2730811 | 0.95[ASN][1000 genomes] |
rs2730817 | 0.95[ASN][1000 genomes] |
rs2730818 | 0.93[ASN][1000 genomes] |
rs2730819 | 0.95[ASN][1000 genomes] |
rs2730820 | 0.95[ASN][1000 genomes] |
rs2730821 | 0.95[ASN][1000 genomes] |
rs2730822 | 0.93[ASN][1000 genomes] |
rs2730824 | 0.86[ASN][1000 genomes] |
rs2730828 | 0.87[YRI][hapmap];0.95[ASN][1000 genomes] |
rs2730829 | 0.95[ASN][1000 genomes] |
rs2733274 | 0.94[ASN][1000 genomes] |
rs2733282 | 0.95[ASN][1000 genomes] |
rs2733291 | 0.95[ASN][1000 genomes] |
rs2733293 | 0.95[ASN][1000 genomes] |
rs2733297 | 0.95[ASN][1000 genomes] |
rs2733298 | 0.81[YRI][hapmap];0.86[ASN][1000 genomes] |
rs2733299 | 0.86[ASN][1000 genomes] |
rs2897268 | 1.00[CEU][hapmap] |
rs2957590 | 0.95[ASN][1000 genomes] |
rs35766123 | 0.95[ASN][1000 genomes] |
rs4584644 | 0.94[YRI][hapmap];0.95[ASN][1000 genomes] |
rs4768353 | 0.81[AFR][1000 genomes];0.95[ASN][1000 genomes] |
rs6582332 | 1.00[CEU][hapmap] |
rs6582334 | 1.00[CEU][hapmap] |
rs7298808 | 0.94[YRI][hapmap];0.94[ASN][1000 genomes] |
rs7954106 | 1.00[CEU][hapmap] |
rs7956320 | 1.00[CEU][hapmap] |
rs7956499 | 0.88[EUR][1000 genomes] |
rs7957823 | 1.00[CEU][hapmap] |
rs7960955 | 1.00[CEU][hapmap] |
rs7963312 | 1.00[CEU][hapmap] |
rs897973 | 0.93[ASN][1000 genomes] |
rs930905 | 1.00[CEU][hapmap] |
rs961337 | 1.00[CEU][hapmap] |
rs971998 | 0.95[ASN][1000 genomes] |
rs981012 | 0.95[ASN][1000 genomes] |
rs989904 | 0.95[ASN][1000 genomes] |
rs996356 | 0.87[YRI][hapmap];0.95[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv832383 | chr12:41693298-41846934 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | n/a |
2 | nsv832384 | chr12:41772648-41971430 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
3 | nsv899036 | chr12:41777144-41807859 | Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandlncRNA | 1 gene(s) | inside rSNPs | n/a |
4 | nsv899037 | chr12:41777144-41819215 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer | TF binding regionCpG islandlncRNA | 1 gene(s) | inside rSNPs | n/a |
5 | nsv1044910 | chr12:41778831-41813198 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandlncRNA | 1 gene(s) | inside rSNPs | n/a |
6 | esv2761735 | chr12:41780758-41811938 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats | TF binding regionCpG islandlncRNA | 1 gene(s) | inside rSNPs | n/a |
7 | esv2757501 | chr12:41780758-41816002 | Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats | TF binding regionCpG islandlncRNA | 1 gene(s) | inside rSNPs | n/a |
8 | esv2759896 | chr12:41780758-41816002 | Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandlncRNA | 1 gene(s) | inside rSNPs | n/a |
9 | esv2755020 | chr12:41780758-41820936 | Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandlncRNA | 1 gene(s) | inside rSNPs | n/a |
10 | nsv899038 | chr12:41784137-41819215 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer | TF binding regionCpG islandlncRNA | 1 gene(s) | inside rSNPs | n/a |
11 | nsv818915 | chr12:41784997-41811063 | Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription | TF binding regionCpG islandlncRNA | 1 gene(s) | inside rSNPs | n/a |
12 | nsv899039 | chr12:41784997-41813207 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandlncRNA | 1 gene(s) | inside rSNPs | n/a |
13 | nsv1050627 | chr12:41789891-41809009 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandlncRNA | 1 gene(s) | inside rSNPs | n/a |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr12:41800600-41802200 | Enhancers | Cortex derived primary cultured neurospheres | brain |
2 | chr12:41801600-41802000 | Active TSS | Brain Anterior Caudate | brain |
3 | chr12:41801600-41805000 | Weak transcription | Fetal Brain Male | brain |
4 | chr12:41801800-41802000 | Weak transcription | Brain Hippocampus Middle | brain |
5 | chr12:41801800-41802200 | Enhancers | Brain Cingulate Gyrus | brain |