Variant report

Variant	rs2733289
Chromosome Location	chr12:41838235-41838236
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 188 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:185)

rs_ID	r²[population]
rs1026462	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1026464	0.86[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10506191	0.86[JPT][hapmap]
rs10506192	0.86[JPT][hapmap]
rs10735993	0.89[ASN][1000 genomes]
rs10785235	0.95[JPT][hapmap]
rs10785258	0.87[CHB][hapmap];0.91[JPT][hapmap]
rs10785261	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs10785265	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10785266	0.96[CEU][hapmap]
rs10880063	0.85[JPT][hapmap]
rs10880067	0.85[JPT][hapmap]
rs10880075	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10880076	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11180834	0.86[JPT][hapmap]
rs11180836	0.82[JPT][hapmap]
rs11180851	0.85[JPT][hapmap]
rs11180863	0.85[JPT][hapmap]
rs11180864	0.85[JPT][hapmap]
rs11180934	0.86[CEU][hapmap]
rs1155220	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1160183	1.00[CEU][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1160184	1.00[CEU][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1160748	1.00[CEU][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1160749	1.00[CEU][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11835941	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs12314238	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12369680	0.84[JPT][hapmap]
rs12817575	0.85[JPT][hapmap]
rs1350429	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1350430	0.96[CEU][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1379758	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1379759	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1379760	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1379761	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1379763	0.93[CEU][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1379764	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1379768	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1379769	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1379770	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1379771	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1379772	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1379773	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1379774	0.93[CEU][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1379776	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1405552	0.86[JPT][hapmap]
rs1458156	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1458157	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1458158	0.81[CEU][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1458159	0.93[CEU][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1458160	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1458165	0.96[CEU][hapmap]
rs1458166	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1458167	0.96[CEU][hapmap];0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1458168	1.00[CEU][hapmap];0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1471161	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1471162	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1471163	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1527090	0.86[JPT][hapmap]
rs1551593	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1551595	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1551596	1.00[CEU][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1598894	1.00[CEU][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1841025	1.00[CEU][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1870285	0.93[CEU][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1870286	0.92[CEU][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1902906	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1902907	0.85[CHB][hapmap]
rs1902911	0.87[CHB][hapmap];0.91[JPT][hapmap]
rs2034923	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2125286	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2125287	0.92[CEU][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2199028	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2250003	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2250009	0.81[CEU][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2250908	1.00[CEU][hapmap];0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2251259	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2251349	1.00[CEU][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2251672	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2251683	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2251684	1.00[CEU][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2253528	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2253633	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2253634	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2255035	0.92[CEU][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2255145	0.93[CEU][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2255152	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2255404	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2256412	0.82[EUR][1000 genomes]
rs2264905	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2405919	0.93[CEU][hapmap]
rs2405920	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2405921	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2446143	1.00[CEU][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2446144	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2468310	0.81[JPT][hapmap];0.82[EUR][1000 genomes]
rs2468314	0.86[CEU][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2468315	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2468316	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2468317	0.93[CEU][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2608689	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2608690	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2608691	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2608692	0.92[CEU][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2608696	0.93[CEU][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2608697	0.93[CEU][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2608701	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2608702	0.96[CEU][hapmap];0.95[YRI][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2608703	0.96[CEU][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2608704	0.93[CEU][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2608705	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2608706	0.93[CEU][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2608707	0.93[CEU][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2608708	0.93[CEU][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2608710	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2608711	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2608714	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2608715	0.85[CEU][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2608716	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2608718	0.93[CEU][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2710264	0.82[EUR][1000 genomes]
rs2730802	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2730803	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2730804	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2730805	0.93[CEU][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2730807	0.85[CEU][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2730809	1.00[CEU][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2730810	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2730811	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2730814	0.81[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2730817	1.00[CEU][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2730818	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2730819	1.00[CEU][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2730820	1.00[CEU][hapmap];0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2730821	1.00[CEU][hapmap];0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2730822	1.00[CEU][hapmap];0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2730824	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2730827	0.96[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2730828	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2730829	1.00[CEU][hapmap];0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2730830	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2733269	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2733274	1.00[CEU][hapmap];0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2733275	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2733276	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2733278	0.90[CEU][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2733280	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2733282	1.00[CEU][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2733284	0.81[EUR][1000 genomes]
rs2733285	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2733287	0.82[CEU][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2733290	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2733291	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2733292	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2733293	1.00[CEU][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2733297	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2733298	0.92[CEU][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2733299	0.93[CEU][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs285556	0.81[CHB][hapmap];0.81[EUR][1000 genomes]
rs285560	0.81[EUR][1000 genomes]
rs285575	0.81[CHB][hapmap];0.81[EUR][1000 genomes]
rs285590	0.81[CHB][hapmap];0.81[EUR][1000 genomes]
rs285592	0.80[EUR][1000 genomes]
rs285593	0.81[CHB][hapmap];0.81[EUR][1000 genomes]
rs285595	0.81[CHB][hapmap];0.81[EUR][1000 genomes]
rs2897268	0.85[JPT][hapmap]
rs2957590	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35766123	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4584644	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4768353	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4768354	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7298808	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7956320	0.84[JPT][hapmap]
rs7960955	0.86[CHB][hapmap];0.91[JPT][hapmap]
rs7963312	0.86[JPT][hapmap]
rs7966732	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs7977318	0.93[CEU][hapmap]
rs897973	1.00[CEU][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs930905	0.87[CHB][hapmap];0.91[JPT][hapmap]
rs961337	0.87[CHB][hapmap];0.91[JPT][hapmap]
rs971998	0.96[CEU][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs981012	1.00[CEU][hapmap];0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs981014	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs989904	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs996356	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832383	chr12:41693298-41846934	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
2	nsv832384	chr12:41772648-41971430	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1037987	chr12:41815867-41840251	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41829600-41860600	Weak transcription	Aorta	Aorta
2	chr12:41831400-41838400	Active TSS	Brain Germinal Matrix	brain
3	chr12:41837800-41838400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr12:41838000-41838400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr12:41838000-41852400	Weak transcription	Fetal Brain Male	brain
6	chr12:41838200-41852400	Weak transcription	Colon Smooth Muscle	Colon

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