Variant report

Variant	rs1379768
Chromosome Location	chr12:41809103-41809104
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 194 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:183)

rs_ID	r²[population]
rs1026462	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap]
rs1026464	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10506191	0.81[JPT][hapmap]
rs10506192	0.81[JPT][hapmap]
rs10735993	0.92[ASN][1000 genomes]
rs10785235	0.90[JPT][hapmap]
rs10785258	0.86[CHB][hapmap];0.91[JPT][hapmap]
rs10785261	0.86[CHB][hapmap];0.95[CHD][hapmap];0.90[JPT][hapmap]
rs10785265	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10785266	0.96[CEU][hapmap]
rs10880063	0.81[CHD][hapmap];0.81[JPT][hapmap]
rs10880067	0.84[CHD][hapmap];0.81[JPT][hapmap]
rs10880075	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10880076	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11180851	0.84[CHD][hapmap];0.81[JPT][hapmap]
rs11180863	0.84[CHD][hapmap];0.81[JPT][hapmap]
rs11180864	0.84[CHD][hapmap];0.81[JPT][hapmap]
rs11180934	0.85[CEU][hapmap]
rs11180999	0.81[CHB][hapmap]
rs1155220	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1160183	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1160184	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1160748	1.00[CEU][hapmap];0.93[GIH][hapmap];0.82[MEX][hapmap];0.98[TSI][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1160749	1.00[CEU][hapmap];0.91[GIH][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11835941	0.85[CHB][hapmap];0.89[JPT][hapmap]
rs12314238	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12817575	0.84[CHD][hapmap];0.81[JPT][hapmap]
rs1350429	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1350430	0.96[CEU][hapmap];0.81[GIH][hapmap];0.83[MEX][hapmap];0.81[TSI][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1379758	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1379759	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1379760	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1379761	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1379763	0.92[CEU][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1379764	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1379769	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1379770	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1379771	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1379772	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1379773	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1379774	0.92[CEU][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1379776	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1405552	0.81[JPT][hapmap]
rs1458156	0.81[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1458157	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1458158	0.81[CEU][hapmap];0.95[GIH][hapmap];0.88[TSI][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1458159	0.92[CEU][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1458160	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1458165	0.96[CEU][hapmap];0.82[MEX][hapmap];0.83[TSI][hapmap]
rs1458166	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1458167	0.96[CEU][hapmap];0.93[GIH][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1458168	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1471161	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1471162	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1471163	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1527090	0.81[JPT][hapmap]
rs1551593	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1551595	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1551596	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1598894	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1841025	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1870285	0.92[CEU][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1870286	0.92[CEU][hapmap];0.93[GIH][hapmap];0.83[MEX][hapmap];0.98[TSI][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1902906	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1902907	0.84[CHB][hapmap];0.82[YRI][hapmap]
rs1902911	0.86[CHB][hapmap];0.91[JPT][hapmap]
rs2034923	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2125286	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2125287	0.91[CEU][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2199028	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2250003	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2250009	0.81[CEU][hapmap];0.93[GIH][hapmap];0.83[MEX][hapmap];0.98[TSI][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2250908	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2251259	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2251349	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2251672	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2251683	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2251684	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2253528	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2253633	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2253634	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2255035	0.92[CEU][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2255145	0.92[CEU][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2255152	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2255404	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2256412	0.82[EUR][1000 genomes]
rs2264905	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2405919	0.92[CEU][hapmap]
rs2405920	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2405921	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2446143	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2446144	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2468310	0.81[CHB][hapmap];0.82[EUR][1000 genomes]
rs2468314	0.85[CEU][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2468315	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2468316	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2468317	0.92[CEU][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2608689	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2608690	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2608691	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2608692	0.92[CEU][hapmap];0.93[GIH][hapmap];0.83[MEX][hapmap];0.98[TSI][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2608696	0.92[CEU][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2608697	0.92[CEU][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2608701	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2608702	0.95[CEU][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2608703	0.96[CEU][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2608704	0.92[CEU][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2608705	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2608706	0.92[CEU][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2608707	0.92[CEU][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2608708	0.92[CEU][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2608710	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2608711	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2608714	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2608715	0.84[CEU][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2608716	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2608718	0.92[CEU][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2710264	0.82[CHB][hapmap];0.82[EUR][1000 genomes]
rs2730802	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2730803	0.81[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2730804	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2730805	0.92[CEU][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2730807	0.84[CEU][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2730809	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2730810	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2730811	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2730814	0.81[CEU][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2730817	1.00[CEU][hapmap];0.93[GIH][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2730818	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2730819	1.00[CEU][hapmap];0.93[GIH][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2730820	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2730821	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2730822	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2730824	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2730827	0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2730828	1.00[CEU][hapmap];0.93[GIH][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2730829	1.00[CEU][hapmap];0.93[GIH][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2730830	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2733269	0.95[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2733274	1.00[CEU][hapmap];0.93[GIH][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2733275	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2733276	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2733278	0.89[CEU][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2733280	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2733282	1.00[CEU][hapmap];0.93[GIH][hapmap];0.98[TSI][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2733284	0.80[EUR][1000 genomes]
rs2733285	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2733287	0.81[CEU][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2733289	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2733290	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2733291	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2733292	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2733293	1.00[CEU][hapmap];0.93[GIH][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2733297	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2733298	0.92[CEU][hapmap];0.93[GIH][hapmap];0.83[MEX][hapmap];0.98[TSI][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2733299	0.92[CEU][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs285556	0.82[CHB][hapmap];0.84[GIH][hapmap];0.81[TSI][hapmap];0.80[EUR][1000 genomes]
rs285560	0.80[EUR][1000 genomes]
rs285575	0.81[CHB][hapmap];0.84[GIH][hapmap];0.86[TSI][hapmap];0.80[EUR][1000 genomes]
rs285590	0.82[CHB][hapmap];0.82[GIH][hapmap];0.86[TSI][hapmap];0.80[EUR][1000 genomes]
rs285592	0.81[CHB][hapmap]
rs285593	0.82[CHB][hapmap];0.84[GIH][hapmap];0.86[TSI][hapmap];0.80[EUR][1000 genomes]
rs285595	0.82[CHB][hapmap];0.84[GIH][hapmap];0.86[TSI][hapmap];0.80[EUR][1000 genomes]
rs2897268	0.84[CHD][hapmap];0.81[JPT][hapmap]
rs2957590	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35766123	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4584644	1.00[CEU][hapmap];0.93[GIH][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4768353	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4768354	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7298808	1.00[CEU][hapmap];0.93[GIH][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7954518	0.82[CHB][hapmap]
rs7960955	0.86[CHB][hapmap];0.91[JPT][hapmap]
rs7963312	0.80[JPT][hapmap]
rs7966732	0.86[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap]
rs7977318	0.92[CEU][hapmap]
rs897973	1.00[CEU][hapmap];0.93[GIH][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs930905	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs961337	0.86[CHB][hapmap];0.91[JPT][hapmap]
rs971998	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs981012	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs981014	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs989904	1.00[CEU][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs996356	1.00[CEU][hapmap];0.93[GIH][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832383	chr12:41693298-41846934	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
2	nsv832384	chr12:41772648-41971430	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv899037	chr12:41777144-41819215	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	n/a
4	nsv1044910	chr12:41778831-41813198	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	n/a
5	esv2761735	chr12:41780758-41811938	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	n/a
6	esv2757501	chr12:41780758-41816002	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	n/a
7	esv2759896	chr12:41780758-41816002	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	n/a
8	esv2755020	chr12:41780758-41820936	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	n/a
9	nsv899038	chr12:41784137-41819215	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	n/a
10	nsv818915	chr12:41784997-41811063	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	n/a
11	nsv899039	chr12:41784997-41813207	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	n/a

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1379768	PDZRN4	cis	parietal	SCAN
rs1379768	C12orf40	cis	cerebellum	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41808800-41812200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr12:41808800-41812600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr12:41809000-41811400	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr12:41809000-41812000	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr12:41809000-41812000	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr12:41809000-41812000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr12:41809000-41812400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr12:41809000-41812400	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr12:41809000-41812400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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