Variant report

Variant	rs7299395
Chromosome Location	chr12:41714602-41714603
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10219633	0.82[JPT][hapmap]
rs10785234	0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs10880037	0.82[JPT][hapmap]
rs10880068	0.82[JPT][hapmap]
rs10880069	0.82[JPT][hapmap]
rs10880070	0.82[JPT][hapmap]
rs10880085	0.82[JPT][hapmap]
rs11180779	0.98[ASN][1000 genomes]
rs11180782	0.82[JPT][hapmap];1.00[ASN][1000 genomes]
rs11180829	0.82[JPT][hapmap]
rs11180830	0.82[JPT][hapmap]
rs11180840	0.82[JPT][hapmap]
rs11180844	0.82[JPT][hapmap]
rs11180845	0.82[JPT][hapmap]
rs11180849	0.82[JPT][hapmap]
rs11180852	1.00[JPT][hapmap]
rs11180860	0.82[JPT][hapmap]
rs11180873	0.82[JPT][hapmap]
rs11180875	0.82[JPT][hapmap]
rs11180879	0.82[JPT][hapmap]
rs11180883	0.82[JPT][hapmap]
rs11180886	0.82[JPT][hapmap]
rs11180903	0.82[JPT][hapmap]
rs11180913	0.82[JPT][hapmap]
rs11180915	0.82[JPT][hapmap]
rs11180917	0.82[JPT][hapmap]
rs11180921	0.82[JPT][hapmap]
rs11180922	0.82[JPT][hapmap]
rs11180928	0.82[JPT][hapmap]
rs11180932	0.82[JPT][hapmap]
rs11180935	0.82[JPT][hapmap]
rs11180941	0.82[JPT][hapmap]
rs11180944	0.82[JPT][hapmap]
rs11180947	0.82[JPT][hapmap]
rs11180948	0.82[JPT][hapmap]
rs11180949	0.82[JPT][hapmap]
rs11180950	0.82[JPT][hapmap]
rs11180952	0.82[JPT][hapmap]
rs11180954	0.82[JPT][hapmap]
rs11180955	0.82[JPT][hapmap]
rs11180959	0.82[JPT][hapmap]
rs11180962	0.82[JPT][hapmap]
rs11180963	0.82[JPT][hapmap]
rs11180964	0.82[JPT][hapmap]
rs11180965	0.82[JPT][hapmap]
rs11180966	1.00[JPT][hapmap]
rs11180967	1.00[JPT][hapmap]
rs11180968	0.82[JPT][hapmap]
rs11180969	0.82[JPT][hapmap]
rs12230294	0.82[JPT][hapmap]
rs12231433	0.82[JPT][hapmap]
rs12232019	0.82[JPT][hapmap]
rs12582204	0.82[JPT][hapmap]
rs1379766	0.82[JPT][hapmap]
rs17129417	1.00[JPT][hapmap]
rs1918230	0.82[JPT][hapmap]
rs3214027	0.82[JPT][hapmap]
rs74079532	1.00[ASN][1000 genomes]
rs7968280	0.82[JPT][hapmap]
rs7969769	0.82[JPT][hapmap]
rs7979435	1.00[JPT][hapmap]
rs9652045	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497867	chr12:41286305-41728650	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv832383	chr12:41693298-41846934	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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