Variant report
| Variant | rs1918230 |
|---|---|
| Chromosome Location | chr12:41718752-41718753 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:84)
| rs_ID | r2[population] |
|---|---|
| rs10219633 | 1.00[CHB][hapmap];0.91[JPT][hapmap] |
| rs10785234 | 1.00[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs10880037 | 1.00[CHB][hapmap];0.91[JPT][hapmap] |
| rs10880068 | 1.00[CHB][hapmap];0.90[JPT][hapmap] |
| rs10880069 | 1.00[CHB][hapmap];0.91[JPT][hapmap] |
| rs10880070 | 1.00[CHB][hapmap];0.90[JPT][hapmap] |
| rs10880080 | 1.00[CHB][hapmap];0.90[JPT][hapmap] |
| rs10880083 | 1.00[CHB][hapmap];0.90[JPT][hapmap] |
| rs10880084 | 0.89[CHB][hapmap] |
| rs10880085 | 1.00[CHB][hapmap];0.91[JPT][hapmap] |
| rs10880090 | 0.89[CHB][hapmap] |
| rs11180779 | 0.98[ASN][1000 genomes] |
| rs11180782 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs11180829 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs11180830 | 1.00[CHB][hapmap];0.91[JPT][hapmap] |
| rs11180833 | 1.00[CHB][hapmap];0.89[JPT][hapmap] |
| rs11180840 | 1.00[CHB][hapmap];0.91[JPT][hapmap] |
| rs11180841 | 1.00[CHB][hapmap];0.90[JPT][hapmap] |
| rs11180844 | 1.00[CHB][hapmap];0.91[JPT][hapmap] |
| rs11180845 | 1.00[CHB][hapmap];0.91[JPT][hapmap] |
| rs11180849 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs11180852 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs11180855 | 1.00[CHB][hapmap];0.86[JPT][hapmap] |
| rs11180860 | 1.00[CHB][hapmap];0.91[JPT][hapmap] |
| rs11180868 | 1.00[CHB][hapmap];0.89[JPT][hapmap] |
| rs11180873 | 1.00[CHB][hapmap];0.91[JPT][hapmap] |
| rs11180874 | 1.00[CHB][hapmap] |
| rs11180875 | 1.00[CHB][hapmap];0.91[JPT][hapmap] |
| rs11180879 | 1.00[CHB][hapmap];0.90[JPT][hapmap] |
| rs11180883 | 1.00[CHB][hapmap];0.90[JPT][hapmap] |
| rs11180886 | 1.00[CHB][hapmap];0.90[JPT][hapmap] |
| rs11180903 | 1.00[CHB][hapmap];0.90[JPT][hapmap] |
| rs11180913 | 1.00[CHB][hapmap];0.91[JPT][hapmap] |
| rs11180915 | 1.00[CHB][hapmap];0.90[JPT][hapmap] |
| rs11180917 | 1.00[CHB][hapmap];0.90[JPT][hapmap] |
| rs11180921 | 1.00[CHB][hapmap];0.91[JPT][hapmap] |
| rs11180922 | 1.00[CHB][hapmap];0.91[JPT][hapmap] |
| rs11180928 | 1.00[CHB][hapmap];0.90[JPT][hapmap] |
| rs11180932 | 1.00[CHB][hapmap];0.91[JPT][hapmap] |
| rs11180935 | 1.00[CHB][hapmap];0.90[JPT][hapmap] |
| rs11180941 | 1.00[CHB][hapmap];0.91[JPT][hapmap] |
| rs11180944 | 1.00[CHB][hapmap];0.91[JPT][hapmap] |
| rs11180947 | 1.00[CHB][hapmap];0.90[JPT][hapmap] |
| rs11180948 | 1.00[CHB][hapmap];0.90[JPT][hapmap] |
| rs11180949 | 1.00[CHB][hapmap];0.91[JPT][hapmap] |
| rs11180950 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs11180952 | 1.00[CHB][hapmap];0.90[JPT][hapmap] |
| rs11180954 | 1.00[CHB][hapmap];0.91[JPT][hapmap] |
| rs11180955 | 0.88[CHB][hapmap];0.90[JPT][hapmap] |
| rs11180959 | 1.00[CHB][hapmap];0.91[JPT][hapmap] |
| rs11180962 | 1.00[CHB][hapmap];0.91[JPT][hapmap] |
| rs11180963 | 1.00[CHB][hapmap];0.91[JPT][hapmap] |
| rs11180964 | 0.88[CHB][hapmap];0.91[JPT][hapmap] |
| rs11180965 | 1.00[CHB][hapmap];0.91[JPT][hapmap] |
| rs11180966 | 1.00[CHB][hapmap];0.82[JPT][hapmap] |
| rs11180967 | 1.00[CHB][hapmap];0.89[JPT][hapmap] |
| rs11180968 | 1.00[CHB][hapmap];0.91[JPT][hapmap] |
| rs11180969 | 1.00[CHB][hapmap];0.90[JPT][hapmap] |
| rs11180970 | 0.89[CHB][hapmap] |
| rs11180972 | 0.89[CHB][hapmap] |
| rs11180973 | 0.89[CHB][hapmap] |
| rs11180974 | 0.89[CHB][hapmap] |
| rs11180975 | 0.89[CHB][hapmap] |
| rs12227540 | 0.89[CHB][hapmap] |
| rs12228172 | 1.00[CHB][hapmap];0.90[JPT][hapmap] |
| rs12230294 | 1.00[CHB][hapmap];0.90[JPT][hapmap] |
| rs12231433 | 1.00[CHB][hapmap];0.91[JPT][hapmap] |
| rs12231803 | 1.00[CHB][hapmap];0.85[JPT][hapmap] |
| rs12232019 | 1.00[CHB][hapmap];0.91[JPT][hapmap] |
| rs12582204 | 1.00[CHB][hapmap];0.90[JPT][hapmap] |
| rs1379766 | 1.00[CHB][hapmap];0.90[JPT][hapmap] |
| rs1458172 | 0.89[CHB][hapmap] |
| rs1458173 | 0.89[CHB][hapmap] |
| rs17129417 | 1.00[CHB][hapmap];0.85[JPT][hapmap] |
| rs17129436 | 0.88[CHB][hapmap] |
| rs17835484 | 0.85[CHB][hapmap] |
| rs2125289 | 0.88[CHB][hapmap] |
| rs3214027 | 1.00[CHB][hapmap];0.90[JPT][hapmap] |
| rs7299395 | 0.82[JPT][hapmap] |
| rs74079532 | 1.00[ASN][1000 genomes] |
| rs7968280 | 1.00[CHB][hapmap];0.91[JPT][hapmap] |
| rs7969769 | 1.00[CHB][hapmap];0.90[JPT][hapmap] |
| rs7979435 | 1.00[CHB][hapmap];0.86[JPT][hapmap] |
| rs9652045 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv497867 | chr12:41286305-41728650 | Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv832383 | chr12:41693298-41846934 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
