Variant report

Variant	rs12582811
Chromosome Location	chr12:48961244-48961245
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11168613	1.00[CHB][hapmap]
rs11834413	1.00[CHB][hapmap]
rs12579133	0.83[ASN][1000 genomes]
rs12579547	1.00[CHB][hapmap]
rs12580814	1.00[CHB][hapmap]
rs12581223	1.00[CHB][hapmap]
rs17234937	1.00[CHB][hapmap]
rs2705127	1.00[CHB][hapmap]
rs4397895	1.00[CHB][hapmap]
rs4547144	1.00[CHB][hapmap]
rs55685217	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427911	chr12:48670336-48979396	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs12582811	ADAMTS20	cis	cerebellum	SCAN
rs12582811	ZNF641	cis	parietal	SCAN
rs12582811	ARF3	cis	lymphoblastoid	seeQTL

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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