Variant report

Variant	rs11168613
Chromosome Location	chr12:48905034-48905035
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:48904094..48906808-chr12:49016863..49019582,2	MCF-7	breast:
2	chr12:48899375..48901667-chr12:48903999..48906182,2	K562	blood:

Variant related genes	Relation type
ENSG00000197376	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11168583	1.00[YRI][hapmap]
rs11832242	1.00[YRI][hapmap]
rs11834413	1.00[CHB][hapmap]
rs12301009	1.00[YRI][hapmap]
rs12578360	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12579133	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12579547	1.00[CHB][hapmap]
rs12580814	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12580859	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12581223	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12582586	0.82[EUR][1000 genomes]
rs12582594	0.82[EUR][1000 genomes]
rs12582811	1.00[CHB][hapmap]
rs17234937	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2705127	1.00[JPT][hapmap]
rs4397895	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4426170	0.80[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs4547144	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55667337	0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs55685217	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55971664	0.82[EUR][1000 genomes]
rs55983865	0.99[EUR][1000 genomes]
rs56034252	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56191575	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs59337124	0.80[EUR][1000 genomes]
rs61940763	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61940764	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61940766	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61940767	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61940768	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61940776	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61940777	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61940779	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61940780	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61940822	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61941972	0.82[EUR][1000 genomes]
rs61942812	0.80[EUR][1000 genomes]
rs61942813	0.82[EUR][1000 genomes]
rs61942816	0.82[EUR][1000 genomes]
rs61942817	0.82[EUR][1000 genomes]
rs61942828	0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs61942829	0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs61942830	0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs61942831	0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427911	chr12:48670336-48979396	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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