Variant report

Variant	rs11168583
Chromosome Location	chr12:48853219-48853220
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11168571	1.00[EUR][1000 genomes]
rs11168585	1.00[EUR][1000 genomes]
rs11168587	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11168603	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11168610	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11168613	1.00[YRI][hapmap]
rs11168626	1.00[EUR][1000 genomes]
rs11503892	1.00[EUR][1000 genomes]
rs11830164	1.00[EUR][1000 genomes]
rs11832242	1.00[YRI][hapmap]
rs11832320	1.00[EUR][1000 genomes]
rs11833210	1.00[EUR][1000 genomes]
rs11833394	1.00[EUR][1000 genomes]
rs11833669	1.00[EUR][1000 genomes]
rs11834377	1.00[EUR][1000 genomes]
rs11837337	1.00[EUR][1000 genomes]
rs11838121	1.00[EUR][1000 genomes]
rs12300165	1.00[EUR][1000 genomes]
rs12301009	1.00[YRI][hapmap]
rs12304826	1.00[EUR][1000 genomes]
rs12305150	1.00[EUR][1000 genomes]
rs12306781	1.00[EUR][1000 genomes]
rs12307016	1.00[EUR][1000 genomes]
rs28706194	1.00[EUR][1000 genomes]
rs28892442	1.00[EUR][1000 genomes]
rs36119652	1.00[EUR][1000 genomes]
rs55956587	1.00[EUR][1000 genomes]
rs56179964	1.00[EUR][1000 genomes]
rs59304927	1.00[EUR][1000 genomes]
rs59708884	1.00[EUR][1000 genomes]
rs73296825	1.00[EUR][1000 genomes]
rs74089357	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427911	chr12:48670336-48979396	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:48851800-48854800	Weak transcription	Brain Anterior Caudate	brain
2	chr12:48851800-48855000	Weak transcription	Brain Angular Gyrus	brain
3	chr12:48851800-48855400	Weak transcription	Pancreas	Pancrea
4	chr12:48852600-48854000	Enhancers	K562	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links