Variant report
Variant | rs12305150 |
---|---|
Chromosome Location | chr12:48936738-48936739 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:5 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr12:48935790..48936824-chr12:49011913..49012916,27 | K562 | blood: | |
2 | chr12:48936113..48936998-chr12:49012151..49012777,3 | MCF-7 | breast: | |
3 | chr12:48934748..48937258-chr12:49020074..49022107,2 | K562 | blood: | |
4 | chr12:48935680..48937116-chr12:49011674..49012886,17 | MCF-7 | breast: | |
5 | chr12:48935919..48936970-chr12:49189329..49190246,4 | K562 | blood: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000224709 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs11168571 | 1.00[EUR][1000 genomes] |
rs11168583 | 1.00[EUR][1000 genomes] |
rs11168585 | 1.00[EUR][1000 genomes] |
rs11168587 | 1.00[EUR][1000 genomes] |
rs11168603 | 1.00[EUR][1000 genomes] |
rs11168610 | 1.00[EUR][1000 genomes] |
rs11168626 | 1.00[EUR][1000 genomes] |
rs11503892 | 1.00[EUR][1000 genomes] |
rs11534 | 1.00[EUR][1000 genomes] |
rs11830164 | 1.00[EUR][1000 genomes] |
rs11830884 | 1.00[EUR][1000 genomes] |
rs11831374 | 1.00[EUR][1000 genomes] |
rs11832320 | 1.00[EUR][1000 genomes] |
rs11833394 | 1.00[EUR][1000 genomes] |
rs11833669 | 1.00[EUR][1000 genomes] |
rs11834377 | 1.00[EUR][1000 genomes] |
rs11835422 | 1.00[EUR][1000 genomes] |
rs11837122 | 1.00[EUR][1000 genomes] |
rs11837337 | 1.00[EUR][1000 genomes] |
rs11837993 | 1.00[EUR][1000 genomes] |
rs11838121 | 1.00[EUR][1000 genomes] |
rs11838289 | 1.00[EUR][1000 genomes] |
rs11838360 | 1.00[EUR][1000 genomes] |
rs12300165 | 1.00[EUR][1000 genomes] |
rs12304826 | 1.00[EUR][1000 genomes] |
rs12306781 | 1.00[EUR][1000 genomes] |
rs12307016 | 1.00[EUR][1000 genomes] |
rs17123267 | 1.00[EUR][1000 genomes] |
rs28706194 | 1.00[EUR][1000 genomes] |
rs28892442 | 1.00[EUR][1000 genomes] |
rs36119652 | 1.00[EUR][1000 genomes] |
rs55956587 | 1.00[EUR][1000 genomes] |
rs56179964 | 1.00[EUR][1000 genomes] |
rs57337154 | 1.00[EUR][1000 genomes] |
rs57454425 | 1.00[EUR][1000 genomes] |
rs57658152 | 1.00[EUR][1000 genomes] |
rs59304927 | 1.00[EUR][1000 genomes] |
rs59708884 | 1.00[EUR][1000 genomes] |
rs60351852 | 1.00[EUR][1000 genomes] |
rs71439468 | 1.00[EUR][1000 genomes] |
rs7303057 | 1.00[EUR][1000 genomes] |
rs7312311 | 1.00[EUR][1000 genomes] |
rs7315319 | 1.00[EUR][1000 genomes] |
rs73296825 | 1.00[EUR][1000 genomes] |
rs74088131 | 1.00[EUR][1000 genomes] |
rs74088137 | 1.00[EUR][1000 genomes] |
rs74088163 | 1.00[EUR][1000 genomes] |
rs74088167 | 1.00[EUR][1000 genomes] |
rs74088185 | 1.00[EUR][1000 genomes] |
rs74088186 | 1.00[EUR][1000 genomes] |
rs74089357 | 1.00[EUR][1000 genomes] |
rs74089364 | 1.00[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv427911 | chr12:48670336-48979396 | Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 35 gene(s) | inside rSNPs | diseases |
2 | nsv1047600 | chr12:48927514-48954225 | Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS | TF binding regionChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
3 | nsv1048307 | chr12:48927514-48958949 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats | TF binding regionChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
No data |