Variant report
| Variant | rs11168603 |
|---|---|
| Chromosome Location | chr12:48890438-48890439 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:48888880..48891853-chr12:48895392..48897603,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:40)
| rs_ID | r2[population] |
|---|---|
| rs11168571 | 1.00[EUR][1000 genomes] |
| rs11168583 | 0.86[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11168585 | 1.00[EUR][1000 genomes] |
| rs11168587 | 0.86[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11168610 | 0.86[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11168626 | 1.00[EUR][1000 genomes] |
| rs11503892 | 1.00[EUR][1000 genomes] |
| rs11534 | 1.00[EUR][1000 genomes] |
| rs11830164 | 1.00[EUR][1000 genomes] |
| rs11832320 | 1.00[EUR][1000 genomes] |
| rs11833210 | 1.00[EUR][1000 genomes] |
| rs11833394 | 1.00[EUR][1000 genomes] |
| rs11833669 | 1.00[EUR][1000 genomes] |
| rs11834377 | 1.00[EUR][1000 genomes] |
| rs11837337 | 1.00[EUR][1000 genomes] |
| rs11838121 | 1.00[EUR][1000 genomes] |
| rs11838289 | 1.00[EUR][1000 genomes] |
| rs12300165 | 0.87[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12304826 | 1.00[EUR][1000 genomes] |
| rs12305150 | 1.00[EUR][1000 genomes] |
| rs12306781 | 1.00[EUR][1000 genomes] |
| rs12307016 | 1.00[EUR][1000 genomes] |
| rs28706194 | 1.00[EUR][1000 genomes] |
| rs28892442 | 1.00[EUR][1000 genomes] |
| rs36119652 | 1.00[EUR][1000 genomes] |
| rs55956587 | 1.00[EUR][1000 genomes] |
| rs56179964 | 1.00[EUR][1000 genomes] |
| rs57337154 | 1.00[EUR][1000 genomes] |
| rs57454425 | 1.00[EUR][1000 genomes] |
| rs57658152 | 1.00[EUR][1000 genomes] |
| rs59304927 | 1.00[EUR][1000 genomes] |
| rs59708884 | 1.00[EUR][1000 genomes] |
| rs60351852 | 1.00[EUR][1000 genomes] |
| rs7312311 | 1.00[EUR][1000 genomes] |
| rs7315319 | 1.00[EUR][1000 genomes] |
| rs73296825 | 1.00[EUR][1000 genomes] |
| rs74088131 | 1.00[EUR][1000 genomes] |
| rs74088137 | 1.00[EUR][1000 genomes] |
| rs74089357 | 1.00[EUR][1000 genomes] |
| rs74089364 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv427911 | chr12:48670336-48979396 | Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 35 gene(s) | inside rSNPs | diseases |
| 2 | nsv975416 | chr12:48882416-48893049 | Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:48887000-48891800 | Weak transcription | Brain Hippocampus Middle | brain |
| 2 | chr12:48888800-48891000 | Weak transcription | Spleen | Spleen |
