Variant report

Variant	rs11168585
Chromosome Location	chr12:48853583-48853584
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:48852008..48853730-chr12:48876286..48878217,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000177627	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs11168571	1.00[EUR][1000 genomes]
rs11168583	1.00[EUR][1000 genomes]
rs11168587	1.00[EUR][1000 genomes]
rs11168603	1.00[EUR][1000 genomes]
rs11168610	1.00[EUR][1000 genomes]
rs11168626	1.00[EUR][1000 genomes]
rs11503892	1.00[EUR][1000 genomes]
rs11830164	1.00[EUR][1000 genomes]
rs11832320	1.00[EUR][1000 genomes]
rs11833210	1.00[EUR][1000 genomes]
rs11833394	1.00[EUR][1000 genomes]
rs11833669	1.00[EUR][1000 genomes]
rs11834377	1.00[EUR][1000 genomes]
rs11837337	1.00[EUR][1000 genomes]
rs11838121	1.00[EUR][1000 genomes]
rs12300165	1.00[EUR][1000 genomes]
rs12304826	1.00[EUR][1000 genomes]
rs12305150	1.00[EUR][1000 genomes]
rs12306781	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12307016	1.00[EUR][1000 genomes]
rs17234937	0.82[AFR][1000 genomes]
rs2705132	0.83[AMR][1000 genomes]
rs28706194	1.00[EUR][1000 genomes]
rs28892442	1.00[EUR][1000 genomes]
rs36119652	1.00[EUR][1000 genomes]
rs55956587	1.00[EUR][1000 genomes]
rs56179964	1.00[EUR][1000 genomes]
rs57214338	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57847713	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58537022	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59304927	1.00[EUR][1000 genomes]
rs59708884	1.00[EUR][1000 genomes]
rs59814472	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60157593	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60457957	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61942829	0.82[AFR][1000 genomes]
rs73296803	1.00[AMR][1000 genomes]
rs73296804	1.00[AMR][1000 genomes]
rs73296814	1.00[AMR][1000 genomes]
rs73296825	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73296837	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73298787	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73298791	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73298792	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74089357	1.00[EUR][1000 genomes]
rs74090293	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74090903	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427911	chr12:48670336-48979396	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:48851800-48854800	Weak transcription	Brain Anterior Caudate	brain
2	chr12:48851800-48855000	Weak transcription	Brain Angular Gyrus	brain
3	chr12:48851800-48855400	Weak transcription	Pancreas	Pancrea
4	chr12:48852600-48854000	Enhancers	K562	blood

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