Variant report

Variant	rs58537022
Chromosome Location	chr12:48888157-48888158
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11168585	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11613869	0.85[AFR][1000 genomes]
rs12306781	1.00[AMR][1000 genomes]
rs12424097	0.81[AFR][1000 genomes]
rs2705132	0.83[AMR][1000 genomes]
rs57214338	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57847713	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59814472	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60157593	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60457957	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60874066	0.81[AFR][1000 genomes]
rs73296803	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73296804	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73296814	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73296825	1.00[AMR][1000 genomes]
rs73296837	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73298787	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73298791	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73298792	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73300707	0.81[AFR][1000 genomes]
rs73302549	0.84[AFR][1000 genomes]
rs74087209	0.81[AFR][1000 genomes]
rs74090293	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74090903	1.00[AMR][1000 genomes]
rs9788163	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427911	chr12:48670336-48979396	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
2	nsv975416	chr12:48882416-48893049	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:48887000-48891800	Weak transcription	Brain Hippocampus Middle	brain
2	chr12:48887600-48890000	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr12:48888000-48888600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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