Variant report

Variant	rs73296825
Chromosome Location	chr12:48844707-48844708
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11168571	1.00[EUR][1000 genomes]
rs11168583	1.00[EUR][1000 genomes]
rs11168585	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11168587	1.00[EUR][1000 genomes]
rs11168603	1.00[EUR][1000 genomes]
rs11168610	1.00[EUR][1000 genomes]
rs11168626	1.00[EUR][1000 genomes]
rs11503892	1.00[EUR][1000 genomes]
rs11830164	1.00[EUR][1000 genomes]
rs11832320	1.00[EUR][1000 genomes]
rs11833210	1.00[EUR][1000 genomes]
rs11833394	1.00[EUR][1000 genomes]
rs11833669	1.00[EUR][1000 genomes]
rs11834377	1.00[EUR][1000 genomes]
rs11837337	1.00[EUR][1000 genomes]
rs11838121	1.00[EUR][1000 genomes]
rs12300165	1.00[EUR][1000 genomes]
rs12304826	1.00[EUR][1000 genomes]
rs12305150	1.00[EUR][1000 genomes]
rs12306781	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12307016	1.00[EUR][1000 genomes]
rs17234937	0.86[AFR][1000 genomes]
rs2705132	0.83[AMR][1000 genomes]
rs28706194	1.00[EUR][1000 genomes]
rs28892442	1.00[EUR][1000 genomes]
rs35725325	1.00[EUR][1000 genomes]
rs56179964	1.00[EUR][1000 genomes]
rs57214338	1.00[AMR][1000 genomes]
rs57847713	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58537022	1.00[AMR][1000 genomes]
rs59814472	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60157593	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60457957	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61942829	0.86[AFR][1000 genomes]
rs73296803	1.00[AMR][1000 genomes]
rs73296804	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73296814	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73296837	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73298787	1.00[AMR][1000 genomes]
rs73298791	1.00[AMR][1000 genomes]
rs73298792	1.00[AMR][1000 genomes]
rs74090293	1.00[AMR][1000 genomes]
rs74090903	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427911	chr12:48670336-48979396	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
2	nsv832402	chr12:48686761-48851020	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv977157	chr12:48839854-48852791	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:48844600-48845000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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