Variant report

Variant	rs60157593
Chromosome Location	chr12:48855240-48855241
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11168585	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11613869	0.82[AFR][1000 genomes]
rs12306781	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2705132	0.83[AMR][1000 genomes]
rs57214338	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57847713	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58537022	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59814472	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60457957	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73296803	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73296804	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73296814	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73296825	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73296837	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73298787	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73298791	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73298792	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73302549	0.81[AFR][1000 genomes]
rs74090293	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74090903	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427911	chr12:48670336-48979396	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:48851800-48855400	Weak transcription	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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