Variant report

Variant	rs60457957
Chromosome Location	chr12:48849500-48849501
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11168585	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12306781	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2705132	0.83[AMR][1000 genomes]
rs57214338	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57847713	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58537022	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59814472	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60157593	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73296803	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73296804	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73296814	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73296825	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73296837	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73298787	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73298791	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73298792	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74090293	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74090903	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427911	chr12:48670336-48979396	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
2	nsv832402	chr12:48686761-48851020	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv977157	chr12:48839854-48852791	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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