Variant report

Variant	rs73296814
Chromosome Location	chr12:48839129-48839130
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11168585	1.00[AMR][1000 genomes]
rs12306781	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17234937	0.82[AFR][1000 genomes]
rs2705132	0.83[AMR][1000 genomes]
rs57214338	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57847713	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58537022	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59814472	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60157593	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60457957	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61942829	0.82[AFR][1000 genomes]
rs73296803	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73296804	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73296825	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73296837	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73298787	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73298791	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73298792	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74090293	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74090903	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427911	chr12:48670336-48979396	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
2	nsv832402	chr12:48686761-48851020	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:48833800-48840400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr12:48834200-48840400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr12:48834200-48840400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr12:48836400-48839600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr12:48836600-48839600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr12:48836600-48839600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr12:48836800-48839800	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr12:48837200-48839400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr12:48837800-48839600	Weak transcription	Hela-S3	cervix
10	chr12:48838600-48839400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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