Variant report
| Variant | rs28706194 |
|---|---|
| Chromosome Location | chr12:48818493-48818494 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs11168571 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11168583 | 1.00[EUR][1000 genomes] |
| rs11168585 | 1.00[EUR][1000 genomes] |
| rs11168587 | 1.00[EUR][1000 genomes] |
| rs11168603 | 1.00[EUR][1000 genomes] |
| rs11168610 | 1.00[EUR][1000 genomes] |
| rs11168626 | 1.00[EUR][1000 genomes] |
| rs11503892 | 1.00[EUR][1000 genomes] |
| rs11833210 | 1.00[EUR][1000 genomes] |
| rs11834377 | 1.00[EUR][1000 genomes] |
| rs12300165 | 1.00[EUR][1000 genomes] |
| rs12304826 | 1.00[EUR][1000 genomes] |
| rs12305150 | 1.00[EUR][1000 genomes] |
| rs12306781 | 1.00[EUR][1000 genomes] |
| rs12307016 | 1.00[EUR][1000 genomes] |
| rs28892442 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs35725325 | 1.00[EUR][1000 genomes] |
| rs73296825 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2758307 | chr12:48429702-48825499 | Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 57 gene(s) | inside rSNPs | diseases |
| 2 | esv2759898 | chr12:48429702-48825499 | Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 57 gene(s) | inside rSNPs | diseases |
| 3 | nsv427911 | chr12:48670336-48979396 | Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 35 gene(s) | inside rSNPs | diseases |
| 4 | nsv832402 | chr12:48686761-48851020 | Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 26 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:48817600-48819200 | Enhancers | HUVEC | blood vessel |
