Variant report

Variant	rs12583874
Chromosome Location	chr13:86352731-86352732
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 194 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:192)

rs_ID	r²[population]
rs1054544	0.84[EUR][1000 genomes]
rs12583872	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12585478	0.85[EUR][1000 genomes]
rs12585480	0.85[EUR][1000 genomes]
rs12585487	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1415400	0.85[EUR][1000 genomes]
rs1752877	0.86[EUR][1000 genomes]
rs1752921	0.84[EUR][1000 genomes]
rs17705118	0.87[EUR][1000 genomes]
rs1832287	0.85[EUR][1000 genomes]
rs2344189	0.86[EUR][1000 genomes]
rs2344190	0.86[EUR][1000 genomes]
rs2987288	0.85[EUR][1000 genomes]
rs2987289	0.85[EUR][1000 genomes]
rs2987290	0.85[EUR][1000 genomes]
rs2987291	0.85[EUR][1000 genomes]
rs34014305	0.84[EUR][1000 genomes]
rs34872500	0.86[EUR][1000 genomes]
rs35377374	0.80[EUR][1000 genomes]
rs35872949	0.87[EUR][1000 genomes]
rs583009	0.86[EUR][1000 genomes]
rs583370	0.86[EUR][1000 genomes]
rs583656	0.84[EUR][1000 genomes]
rs584777	0.86[EUR][1000 genomes]
rs587844	0.86[EUR][1000 genomes]
rs587896	0.85[EUR][1000 genomes]
rs588777	0.85[EUR][1000 genomes]
rs588858	0.85[EUR][1000 genomes]
rs589226	0.85[EUR][1000 genomes]
rs589634	0.86[EUR][1000 genomes]
rs590171	0.85[EUR][1000 genomes]
rs590231	0.85[EUR][1000 genomes]
rs590511	0.85[EUR][1000 genomes]
rs590644	0.86[EUR][1000 genomes]
rs591368	0.85[EUR][1000 genomes]
rs591442	0.80[EUR][1000 genomes]
rs591499	0.85[EUR][1000 genomes]
rs592256	0.85[EUR][1000 genomes]
rs592421	0.86[EUR][1000 genomes]
rs593709	0.84[EUR][1000 genomes]
rs593725	0.86[EUR][1000 genomes]
rs594386	0.85[EUR][1000 genomes]
rs596310	0.86[EUR][1000 genomes]
rs597478	0.86[EUR][1000 genomes]
rs597514	0.86[EUR][1000 genomes]
rs598507	0.84[EUR][1000 genomes]
rs600520	0.86[EUR][1000 genomes]
rs601494	0.85[EUR][1000 genomes]
rs602824	0.85[EUR][1000 genomes]
rs602889	0.86[EUR][1000 genomes]
rs603661	0.85[EUR][1000 genomes]
rs603713	0.86[EUR][1000 genomes]
rs604220	0.86[EUR][1000 genomes]
rs605341	0.85[EUR][1000 genomes]
rs606300	0.85[EUR][1000 genomes]
rs606646	0.84[EUR][1000 genomes]
rs608338	0.86[EUR][1000 genomes]
rs608988	0.86[EUR][1000 genomes]
rs609220	0.86[EUR][1000 genomes]
rs609289	0.84[EUR][1000 genomes]
rs611842	0.85[EUR][1000 genomes]
rs612609	0.85[EUR][1000 genomes]
rs612694	0.85[EUR][1000 genomes]
rs614345	0.86[EUR][1000 genomes]
rs617063	0.84[EUR][1000 genomes]
rs617544	0.86[EUR][1000 genomes]
rs617598	0.86[EUR][1000 genomes]
rs618855	0.86[EUR][1000 genomes]
rs618858	0.85[EUR][1000 genomes]
rs619390	0.86[EUR][1000 genomes]
rs621225	0.86[EUR][1000 genomes]
rs621988	0.86[EUR][1000 genomes]
rs622321	0.86[EUR][1000 genomes]
rs622377	0.85[EUR][1000 genomes]
rs623412	0.85[EUR][1000 genomes]
rs623794	0.85[EUR][1000 genomes]
rs624935	0.86[EUR][1000 genomes]
rs625392	0.86[EUR][1000 genomes]
rs625506	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs625955	0.87[EUR][1000 genomes]
rs627569	0.86[EUR][1000 genomes]
rs628741	0.86[EUR][1000 genomes]
rs629718	0.86[EUR][1000 genomes]
rs630555	0.86[EUR][1000 genomes]
rs631283	0.86[EUR][1000 genomes]
rs631418	0.86[EUR][1000 genomes]
rs631869	0.86[EUR][1000 genomes]
rs632209	0.86[EUR][1000 genomes]
rs632261	0.86[EUR][1000 genomes]
rs632662	0.86[EUR][1000 genomes]
rs633573	0.86[EUR][1000 genomes]
rs633838	0.86[EUR][1000 genomes]
rs634766	0.83[EUR][1000 genomes]
rs635275	0.84[EUR][1000 genomes]
rs636160	0.86[EUR][1000 genomes]
rs637400	0.86[EUR][1000 genomes]
rs637726	0.85[EUR][1000 genomes]
rs637772	0.86[EUR][1000 genomes]
rs637862	0.86[EUR][1000 genomes]
rs640570	0.85[EUR][1000 genomes]
rs645154	0.86[EUR][1000 genomes]
rs647958	0.86[EUR][1000 genomes]
rs648680	0.86[EUR][1000 genomes]
rs649499	0.86[EUR][1000 genomes]
rs651401	0.84[EUR][1000 genomes]
rs651838	0.86[EUR][1000 genomes]
rs652258	0.86[EUR][1000 genomes]
rs652301	0.86[EUR][1000 genomes]
rs652337	0.84[EUR][1000 genomes]
rs652731	0.86[EUR][1000 genomes]
rs654972	0.85[EUR][1000 genomes]
rs657037	0.86[EUR][1000 genomes]
rs658265	0.86[EUR][1000 genomes]
rs658322	0.86[EUR][1000 genomes]
rs658400	0.88[EUR][1000 genomes]
rs659603	0.86[EUR][1000 genomes]
rs660937	0.85[EUR][1000 genomes]
rs663540	0.85[EUR][1000 genomes]
rs664215	0.85[EUR][1000 genomes]
rs664388	0.86[EUR][1000 genomes]
rs66539861	0.87[EUR][1000 genomes]
rs666568	0.86[EUR][1000 genomes]
rs666881	0.86[EUR][1000 genomes]
rs666909	0.85[EUR][1000 genomes]
rs668321	0.86[EUR][1000 genomes]
rs669668	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs670101	0.86[EUR][1000 genomes]
rs670363	0.86[EUR][1000 genomes]
rs67108773	0.85[EUR][1000 genomes]
rs67149025	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs672602	0.86[EUR][1000 genomes]
rs673100	0.86[EUR][1000 genomes]
rs673886	0.86[EUR][1000 genomes]
rs673888	0.86[EUR][1000 genomes]
rs674367	0.82[EUR][1000 genomes]
rs674815	0.86[EUR][1000 genomes]
rs675263	0.86[EUR][1000 genomes]
rs67665326	0.86[EUR][1000 genomes]
rs677065	0.86[EUR][1000 genomes]
rs677487	0.86[EUR][1000 genomes]
rs677545	0.86[EUR][1000 genomes]
rs677569	0.86[EUR][1000 genomes]
rs677944	0.86[EUR][1000 genomes]
rs678467	0.86[EUR][1000 genomes]
rs678482	0.86[EUR][1000 genomes]
rs679684	0.86[EUR][1000 genomes]
rs680504	0.86[EUR][1000 genomes]
rs681306	0.86[EUR][1000 genomes]
rs681394	0.86[EUR][1000 genomes]
rs68151721	0.88[EUR][1000 genomes]
rs684595	0.85[EUR][1000 genomes]
rs684705	0.85[EUR][1000 genomes]
rs685786	0.86[EUR][1000 genomes]
rs685854	0.86[EUR][1000 genomes]
rs689246	0.85[EUR][1000 genomes]
rs689282	0.86[EUR][1000 genomes]
rs694502	0.85[EUR][1000 genomes]
rs7326290	0.85[EUR][1000 genomes]
rs7981131	0.86[EUR][1000 genomes]
rs7997887	0.86[EUR][1000 genomes]
rs7998374	0.86[EUR][1000 genomes]
rs7998717	0.86[EUR][1000 genomes]
rs9319176	0.86[EUR][1000 genomes]
rs9319177	0.86[EUR][1000 genomes]
rs9319178	0.86[EUR][1000 genomes]
rs9566093	0.86[EUR][1000 genomes]
rs9566094	0.86[EUR][1000 genomes]
rs9566095	0.86[EUR][1000 genomes]
rs9566096	0.86[EUR][1000 genomes]
rs9566099	0.85[EUR][1000 genomes]
rs9566100	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9566101	0.85[EUR][1000 genomes]
rs9566103	0.81[EUR][1000 genomes]
rs9566104	0.82[EUR][1000 genomes]
rs9575945	0.86[EUR][1000 genomes]
rs9575946	0.85[EUR][1000 genomes]
rs9575947	0.86[EUR][1000 genomes]
rs9575948	0.86[EUR][1000 genomes]
rs9575949	0.86[EUR][1000 genomes]
rs9575950	0.86[EUR][1000 genomes]
rs9575951	0.86[EUR][1000 genomes]
rs9575952	0.86[EUR][1000 genomes]
rs9575954	0.86[EUR][1000 genomes]
rs9575959	0.85[EUR][1000 genomes]
rs9575960	0.85[EUR][1000 genomes]
rs9575961	0.85[EUR][1000 genomes]
rs9575962	0.81[EUR][1000 genomes]
rs9575963	0.82[EUR][1000 genomes]
rs9575964	0.84[EUR][1000 genomes]
rs9575965	0.84[EUR][1000 genomes]
rs9575966	0.84[EUR][1000 genomes]
rs9635070	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037563	chr13:85830511-86414012	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv832668	chr13:86234885-86364254	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:86335000-86372800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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