Variant report

Variant	rs12584374
Chromosome Location	chr13:90263015-90263016
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1016797	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1016798	0.98[ASN][1000 genomes]
rs10507977	0.98[ASN][1000 genomes]
rs1114041	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12583712	0.93[ASN][1000 genomes]
rs12584434	0.98[ASN][1000 genomes]
rs12586109	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1327326	0.82[EUR][1000 genomes]
rs1327339	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1409918	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17662671	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17729851	0.98[ASN][1000 genomes]
rs17729910	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17729945	0.98[ASN][1000 genomes]
rs2349551	0.82[EUR][1000 genomes]
rs4476032	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs60005206	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs66526875	0.98[ASN][1000 genomes]
rs7325733	0.98[ASN][1000 genomes]
rs7331995	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73591537	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73591554	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73593555	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs913229	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs959351	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs967389	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044807	chr13:89991827-90263328	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1053657	chr13:90100510-90578568	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1038982	chr13:90199563-90345091	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS	TF binding region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:90262800-90264200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr13:90262800-90264400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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