Variant report
| Variant | rs73591537 |
|---|---|
| Chromosome Location | chr13:90266812-90266813 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs1016797 | 0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1016798 | 1.00[ASN][1000 genomes] |
| rs10507977 | 1.00[ASN][1000 genomes] |
| rs1114041 | 0.81[AMR][1000 genomes] |
| rs12583712 | 0.91[ASN][1000 genomes] |
| rs12584374 | 0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs12584434 | 1.00[ASN][1000 genomes] |
| rs12586109 | 0.86[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs1327326 | 0.83[AMR][1000 genomes] |
| rs1327339 | 0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1409918 | 0.81[AMR][1000 genomes] |
| rs17729851 | 1.00[ASN][1000 genomes] |
| rs17729910 | 0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17729945 | 1.00[ASN][1000 genomes] |
| rs1808096 | 0.81[AMR][1000 genomes] |
| rs2349551 | 0.83[AMR][1000 genomes] |
| rs60005206 | 0.81[AMR][1000 genomes] |
| rs66526875 | 1.00[ASN][1000 genomes] |
| rs7325733 | 1.00[ASN][1000 genomes] |
| rs7331995 | 0.81[AMR][1000 genomes] |
| rs73591554 | 0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73593555 | 0.81[AMR][1000 genomes] |
| rs913229 | 0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs959351 | 0.82[AMR][1000 genomes];0.85[ASN][1000 genomes] |
| rs967389 | 0.82[AMR][1000 genomes];0.91[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1053657 | chr13:90100510-90578568 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv1038982 | chr13:90199563-90345091 | Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS | TF binding regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:90266600-90267000 | Enhancers | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 2 | chr13:90266600-90267000 | Enhancers | HMEC | breast |
