Variant report

Variant	rs12584466
Chromosome Location	chr13:97915827-97915828
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:97915607..97918159-chr13:97919580..97921981,3	K562	blood:
2	chr13:97907577..97910911-chr13:97913686..97917322,4	K562	blood:
3	chr13:97915258..97917739-chr13:97924831..97926960,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10467250	1.00[CHD][hapmap]
rs7333560	1.00[CHB][hapmap]
rs73555775	0.90[ASN][1000 genomes]
rs9582122	1.00[CHD][hapmap]
rs9584537	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045777	chr13:97875574-97955134	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97903400-97920600	Weak transcription	Thymus	Thymus
2	chr13:97906200-97916200	Enhancers	Brain Angular Gyrus	brain
3	chr13:97906800-97916200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
4	chr13:97906800-97919800	Enhancers	Brain Anterior Caudate	brain
5	chr13:97907200-97916000	Enhancers	Right Ventricle	heart
6	chr13:97909200-97918600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr13:97910400-97917000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr13:97910400-97918600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr13:97910600-97927600	Weak transcription	Primary hematopoietic stem cells	blood
10	chr13:97910600-97935000	Weak transcription	Colonic Mucosa	Colon
11	chr13:97910800-97918800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr13:97911000-97918600	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr13:97911000-97919200	Weak transcription	Fetal Kidney	kidney
14	chr13:97911200-97918600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr13:97911200-97919200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr13:97911400-97919200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr13:97911400-97919600	Weak transcription	Primary B cells from cord blood	blood
18	chr13:97912000-97918600	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr13:97912200-97919200	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr13:97912400-97918600	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr13:97912400-97920400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr13:97912800-97917000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr13:97912800-97918600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr13:97912800-97918800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr13:97912800-97925200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr13:97913000-97917400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr13:97913000-97918400	Weak transcription	Fetal Muscle Trunk	muscle
28	chr13:97913000-97918600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr13:97913000-97919800	Weak transcription	NHEK	skin
30	chr13:97913200-97924800	Weak transcription	Stomach Mucosa	stomach
31	chr13:97913400-97920000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr13:97913600-97916200	Strong transcription	Fetal Intestine Small	intestine
33	chr13:97913600-97919600	Weak transcription	Fetal Intestine Large	intestine
34	chr13:97913600-97925200	Weak transcription	HSMMtube	muscle
35	chr13:97913600-97926600	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr13:97913800-97917000	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr13:97913800-97918600	Weak transcription	NH-A	brain
38	chr13:97913800-97919400	Weak transcription	Fetal Heart	heart
39	chr13:97913800-97920200	Weak transcription	Primary T cells from cord blood	blood
40	chr13:97913800-97926600	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr13:97914000-97917200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr13:97914000-97918000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr13:97914000-97919400	Weak transcription	Monocytes-CD14+_RO01746	blood
44	chr13:97914200-97916000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr13:97914200-97917800	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr13:97914200-97918600	Weak transcription	HMEC	breast
47	chr13:97914200-97920200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr13:97914200-97925200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
49	chr13:97914200-97925400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr13:97914200-97927600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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