Variant report

Variant	rs9584537
Chromosome Location	chr13:97933216-97933217
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:97930811..97933716-chr13:97934774..97936909,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10467250	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11069258	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12184720	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs12584466	1.00[CHD][hapmap]
rs9300399	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9582121	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9582122	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045777	chr13:97875574-97955134	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv832694	chr13:97930561-98137882	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97910600-97935000	Weak transcription	Colonic Mucosa	Colon
2	chr13:97914200-97960200	Weak transcription	Fetal Brain Male	brain
3	chr13:97919000-97935000	Weak transcription	Gastric	stomach
4	chr13:97921400-97934800	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr13:97924800-97936200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr13:97925200-97936400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr13:97925600-97935600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr13:97925800-97936600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr13:97925800-97987200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr13:97926800-97935000	Weak transcription	Lung	lung
11	chr13:97928600-97933400	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr13:97929000-97937600	Enhancers	Colon Smooth Muscle	Colon
13	chr13:97929000-97947200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr13:97929200-97936400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr13:97929400-97934800	Enhancers	Brain Anterior Caudate	brain
16	chr13:97929400-97935000	Weak transcription	Aorta	Aorta
17	chr13:97929400-97955000	Weak transcription	Fetal Muscle Trunk	muscle
18	chr13:97929600-97933600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr13:97929600-97934800	Weak transcription	GM12878-XiMat	blood
20	chr13:97929600-97938800	Weak transcription	Fetal Intestine Small	intestine
21	chr13:97929600-97953400	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr13:97929800-97934000	Genic enhancers	HepG2	liver
23	chr13:97929800-97936000	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr13:97929800-97953200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr13:97929800-97953400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr13:97930000-97934000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr13:97930200-97933600	Enhancers	Adipose Nuclei	Adipose
28	chr13:97930200-97934000	Enhancers	Brain Angular Gyrus	brain
29	chr13:97930600-97933600	Enhancers	Muscle Satellite Cultured Cells	--
30	chr13:97930600-97933600	Enhancers	NH-A	brain
31	chr13:97930600-97937000	Enhancers	Brain Cingulate Gyrus	brain
32	chr13:97930800-97933400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr13:97930800-97933400	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr13:97930800-97933400	Enhancers	Fetal Kidney	kidney
35	chr13:97930800-97933400	Enhancers	Skeletal Muscle Female	skeletal muscle
36	chr13:97930800-97933600	Enhancers	HSMM	muscle
37	chr13:97930800-97933600	Enhancers	NHLF	lung
38	chr13:97930800-97933800	Enhancers	A549	lung
39	chr13:97930800-97936800	Enhancers	Skeletal Muscle Male	skeletal muscle
40	chr13:97931000-97933400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr13:97931000-97935600	Strong transcription	Primary T cells from cord blood	blood
42	chr13:97931000-97953600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr13:97931200-97933600	Enhancers	HSMMtube	muscle
44	chr13:97931200-97936200	Weak transcription	Monocytes-CD14+_RO01746	blood
45	chr13:97931200-97949000	Weak transcription	Primary hematopoietic stem cells	blood
46	chr13:97931400-97935800	Enhancers	NHEK	skin
47	chr13:97931600-97936400	Weak transcription	Fetal Intestine Large	intestine
48	chr13:97931600-97936800	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
49	chr13:97931800-97935600	Weak transcription	Stomach Mucosa	stomach
50	chr13:97932000-97933400	Enhancers	Stomach Smooth Muscle	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links