Variant report
| Variant | rs12584695 |
|---|---|
| Chromosome Location | chr13:87035270-87035271 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-SLITRK6-13 | chr13:87035114-87035336 | NONHSAT034577 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs10467248 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1158772 | 1.00[EUR][1000 genomes] |
| rs11839229 | 0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11839416 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11839791 | 1.00[EUR][1000 genomes] |
| rs11841051 | 1.00[EUR][1000 genomes] |
| rs12585540 | 1.00[EUR][1000 genomes] |
| rs13378556 | 1.00[EUR][1000 genomes] |
| rs16951689 | 1.00[EUR][1000 genomes] |
| rs16953167 | 0.81[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs57699320 | 0.82[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs7337357 | 1.00[EUR][1000 genomes] |
| rs73552169 | 0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs9302073 | 1.00[EUR][1000 genomes] |
| rs9302085 | 0.94[EUR][1000 genomes] |
| rs9590170 | 1.00[EUR][1000 genomes] |
| rs9805799 | 0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1047136 | chr13:86979109-87555131 | Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | esv2763045 | chr13:87005617-87079364 | Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers | lncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:87035200-87035600 | Genic enhancers | iPS DF 19.11 Cell Line | embryonic stem cell |
