Variant report

Variant	rs12585540
Chromosome Location	chr13:87021111-87021112
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10467248	1.00[EUR][1000 genomes]
rs1158772	1.00[EUR][1000 genomes]
rs11839229	1.00[EUR][1000 genomes]
rs11839416	1.00[EUR][1000 genomes]
rs11839791	1.00[EUR][1000 genomes]
rs11841051	1.00[EUR][1000 genomes]
rs12584695	1.00[EUR][1000 genomes]
rs13378556	1.00[EUR][1000 genomes]
rs16951689	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16953167	0.97[EUR][1000 genomes]
rs57699320	0.83[EUR][1000 genomes]
rs7337357	1.00[EUR][1000 genomes]
rs73552169	0.94[EUR][1000 genomes]
rs9302073	1.00[EUR][1000 genomes]
rs9302085	0.94[EUR][1000 genomes]
rs9590170	1.00[EUR][1000 genomes]
rs9805799	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047136	chr13:86979109-87555131	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv2763045	chr13:87005617-87079364	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:87018200-87025400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr13:87018200-87025400	Weak transcription	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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