Variant report

Variant	rs12584769
Chromosome Location	chr13:110781449-110781450
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:110780351..110781890-chr13:110782553..110784222,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs7334874	0.85[EUR][1000 genomes]
rs7334892	0.85[EUR][1000 genomes]
rs9515145	0.86[EUR][1000 genomes]
rs9515146	0.86[EUR][1000 genomes]
rs9515148	0.86[EUR][1000 genomes]
rs9521603	0.86[EUR][1000 genomes]
rs9521604	0.86[EUR][1000 genomes]
rs9521605	0.86[EUR][1000 genomes]
rs9521607	0.86[EUR][1000 genomes]
rs9521609	0.90[EUR][1000 genomes]
rs9521610	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901006	chr13:110748857-110806490	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv456115	chr13:110756664-110806490	Enhancers Bivalent/Poised TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv563100	chr13:110756664-110806490	Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv1052147	chr13:110765635-110917782	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110772600-110781800	Enhancers	HMEC	breast
2	chr13:110778000-110782400	Enhancers	Fetal Muscle Leg	muscle
3	chr13:110778200-110782400	Enhancers	GM12878-XiMat	blood
4	chr13:110779000-110784400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr13:110779200-110781800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr13:110779200-110781800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr13:110779200-110785000	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr13:110779400-110783000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr13:110779400-110784600	Weak transcription	Brain Germinal Matrix	brain
10	chr13:110779600-110781800	Enhancers	HUVEC	blood vessel
11	chr13:110779600-110784000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr13:110779600-110784400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr13:110779600-110785000	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr13:110779600-110785200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr13:110779600-110789400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr13:110779800-110781600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr13:110779800-110784000	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr13:110779800-110787400	Weak transcription	Brain Angular Gyrus	brain
19	chr13:110780000-110781600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr13:110780000-110781600	Weak transcription	Fetal Muscle Trunk	muscle
21	chr13:110780000-110781600	Weak transcription	Lung	lung
22	chr13:110780000-110783000	Weak transcription	Fetal Brain Male	brain
23	chr13:110780000-110784600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr13:110780000-110784600	Weak transcription	Brain Anterior Caudate	brain
25	chr13:110780000-110785000	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr13:110780200-110781600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr13:110780200-110781600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr13:110780200-110781600	Weak transcription	Psoas Muscle	Psoas
29	chr13:110780200-110782400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr13:110780200-110782800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr13:110780200-110783800	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr13:110780400-110782200	Active TSS	Skeletal Muscle Female	skeletal muscle
33	chr13:110780400-110784400	Weak transcription	Fetal Heart	heart
34	chr13:110780400-110784800	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr13:110780400-110787200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr13:110780600-110781600	Weak transcription	Left Ventricle	heart
37	chr13:110780600-110781600	Flanking Active TSS	NH-A	brain
38	chr13:110780600-110782000	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr13:110780600-110782800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr13:110780600-110785200	Weak transcription	Right Atrium	heart
41	chr13:110780600-110789400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr13:110780600-110790400	Weak transcription	Spleen	Spleen
43	chr13:110780800-110782000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chr13:110781000-110781800	Enhancers	Osteobl	bone
45	chr13:110781000-110782800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr13:110781200-110781600	Enhancers	Muscle Satellite Cultured Cells	--
47	chr13:110781200-110789200	Weak transcription	NHEK	skin
48	chr13:110781200-110789400	Weak transcription	Adipose Nuclei	Adipose
49	chr13:110781400-110781800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr13:110781400-110781800	Enhancers	Placenta	Placenta

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