Variant report

Variant	rs9521604
Chromosome Location	chr13:110770094-110770095
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11619453	0.94[ASN][1000 genomes]
rs12584769	0.86[EUR][1000 genomes]
rs16975324	0.87[ASN][1000 genomes]
rs2166209	0.89[ASN][1000 genomes]
rs7334874	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7334892	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7996553	0.84[ASN][1000 genomes]
rs9515145	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9515146	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9515148	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9521603	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9521605	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9521606	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9521607	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9521609	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9521610	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9559736	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901006	chr13:110748857-110806490	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv563099	chr13:110749252-110778894	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv456115	chr13:110756664-110806490	Enhancers Bivalent/Poised TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv563100	chr13:110756664-110806490	Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv1052147	chr13:110765635-110917782	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110763000-110772600	Weak transcription	Left Ventricle	heart
2	chr13:110763000-110775400	Weak transcription	HSMMtube	muscle
3	chr13:110765800-110775800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr13:110766200-110772600	Weak transcription	Right Ventricle	heart
5	chr13:110766200-110773000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr13:110766600-110772600	Weak transcription	GM12878-XiMat	blood
7	chr13:110766600-110775800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr13:110767000-110774800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr13:110767200-110770200	Weak transcription	Adipose Nuclei	Adipose
10	chr13:110767400-110772600	Weak transcription	NH-A	brain
11	chr13:110768000-110772600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr13:110768000-110772600	Weak transcription	HMEC	breast
13	chr13:110768400-110772600	Weak transcription	A549	lung
14	chr13:110768800-110772800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr13:110769000-110772200	Weak transcription	Fetal Heart	heart
16	chr13:110769400-110778000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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