Variant report

Variant	rs12587758
Chromosome Location	chr14:64951027-64951028
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:64804683..64806221-chr14:64950769..64952407,2	MCF-7	breast:
2	chr14:64949845..64951657-chr14:64957162..64959777,2	MCF-7	breast:
3	chr14:64950027..64951532-chr14:64966808..64969556,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000214770	Chromatin interaction
ENSG00000140009	Chromatin interaction
ENSG00000089775	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11849019	1.00[EUR][1000 genomes]
rs12586702	1.00[EUR][1000 genomes]
rs35519051	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902022	chr14:64926581-64958638	Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64933000-64951600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:64933000-64951800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr14:64933000-64952000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr14:64933000-64953400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr14:64933000-64953600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr14:64933000-64953600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr14:64933000-64953600	Weak transcription	Lung	lung
8	chr14:64933000-64953600	Weak transcription	Ovary	ovary
9	chr14:64933000-64953600	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr14:64933000-64953600	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr14:64933000-64953600	Weak transcription	HSMM	muscle
12	chr14:64933000-64953600	Weak transcription	NHLF	lung
13	chr14:64933200-64951600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr14:64933200-64951800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr14:64933200-64953600	Weak transcription	Primary B cells from cord blood	blood
16	chr14:64933200-64953600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr14:64933200-64953600	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr14:64933200-64953600	Weak transcription	NHEK	skin
19	chr14:64933200-64953800	Weak transcription	Fetal Brain Female	brain
20	chr14:64933200-64953800	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr14:64933200-64968400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr14:64933400-64953600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr14:64933400-64953600	Weak transcription	Brain Hippocampus Middle	brain
24	chr14:64933400-64953600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr14:64933400-64953600	Weak transcription	Fetal Stomach	stomach
26	chr14:64933400-64953600	Weak transcription	NH-A	brain
27	chr14:64933400-64968200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr14:64933600-64951600	Weak transcription	Brain Angular Gyrus	brain
29	chr14:64933600-64953600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr14:64934000-64953600	Weak transcription	Thymus	Thymus
31	chr14:64934200-64953800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr14:64934400-64953600	Weak transcription	Adipose Nuclei	Adipose
33	chr14:64934800-64951800	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr14:64935200-64951200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr14:64935200-64951600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
36	chr14:64935400-64951600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr14:64935600-64951800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr14:64935600-64953600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr14:64936800-64968400	Weak transcription	Fetal Brain Male	brain
40	chr14:64938000-64951800	Weak transcription	Fetal Muscle Trunk	muscle
41	chr14:64938600-64951800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr14:64939000-64951800	Weak transcription	A549	lung
43	chr14:64939000-64953600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chr14:64940800-64951600	Weak transcription	Monocytes-CD14+_RO01746	blood
45	chr14:64940800-64954000	Weak transcription	Colon Smooth Muscle	Colon
46	chr14:64941000-64953600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr14:64941000-64953800	Weak transcription	Brain Germinal Matrix	brain
48	chr14:64941000-64954000	Weak transcription	Esophagus	oesophagus
49	chr14:64941000-64954000	Weak transcription	Psoas Muscle	Psoas
50	chr14:64942400-64953600	Weak transcription	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links