Variant report

Variant	rs12586702
Chromosome Location	chr14:65106080-65106081
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:64968284..64972899-chr14:65099732..65106261,9	MCF-7	breast:
2	chr14:65101924..65103493-chr14:65105064..65108032,2	MCF-7	breast:
3	chr14:65098847..65101532-chr14:65103067..65106443,3	MCF-7	breast:
4	chr14:65105112..65107828-chr14:65169669..65172570,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000126822	Chromatin interaction
ENSG00000126804	Chromatin interaction
ENSG00000089775	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10134525	0.86[ASN][1000 genomes]
rs11846264	0.88[ASN][1000 genomes]
rs11849019	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11851257	0.86[ASN][1000 genomes]
rs12587758	1.00[EUR][1000 genomes]
rs17101956	0.80[ASN][1000 genomes]
rs1980521	0.90[ASN][1000 genomes]
rs35519051	1.00[EUR][1000 genomes]
rs7153518	0.81[ASN][1000 genomes]
rs7156649	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049097	chr14:65027753-65202018	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65096000-65106200	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr14:65099400-65111600	Weak transcription	Osteobl	bone
3	chr14:65103000-65106800	Enhancers	Fetal Intestine Small	intestine
4	chr14:65103000-65109600	Enhancers	Placenta	Placenta
5	chr14:65103200-65106600	Enhancers	NHEK	skin
6	chr14:65103200-65106800	Enhancers	NHLF	lung
7	chr14:65103400-65106200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr14:65103400-65106400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr14:65103400-65106400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr14:65103400-65106400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr14:65103400-65107000	Enhancers	Liver	Liver
12	chr14:65103400-65111000	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr14:65103600-65106600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr14:65103800-65106400	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr14:65103800-65111400	Weak transcription	Rectal Smooth Muscle	rectum
16	chr14:65103800-65111600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr14:65103800-65111800	Weak transcription	Fetal Heart	heart
18	chr14:65103800-65112400	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr14:65104000-65106200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr14:65104000-65108800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr14:65104200-65108800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr14:65104400-65106800	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr14:65104600-65106600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr14:65104800-65106800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr14:65105000-65106400	Weak transcription	Adipose Nuclei	Adipose
26	chr14:65105000-65106400	Weak transcription	Fetal Lung	lung
27	chr14:65105000-65107000	Enhancers	NH-A	brain
28	chr14:65105000-65110400	Weak transcription	HSMM	muscle
29	chr14:65105200-65106200	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr14:65105200-65107200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr14:65105200-65107400	Weak transcription	HMEC	breast
32	chr14:65105400-65106200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr14:65105400-65106400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr14:65105400-65106800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr14:65105600-65107000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr14:65105600-65107000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
37	chr14:65105800-65106600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr14:65105800-65107000	Enhancers	Fetal Thymus	thymus
39	chr14:65106000-65106600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr14:65106000-65106800	Enhancers	A549	lung
41	chr14:65106000-65106800	Enhancers	GM12878-XiMat	blood
42	chr14:65106000-65107000	Enhancers	Fetal Intestine Large	intestine
43	chr14:65106000-65107000	Enhancers	Placenta Amnion	Placenta Amnion

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