Variant report

Variant	rs10134525
Chromosome Location	chr14:65121635-65121636
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:64968793..64973673-chr14:65119564..65122078,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000126804	Chromatin interaction
ENSG00000089775	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10134174	0.89[EUR][1000 genomes]
rs11846264	0.93[AFR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11849019	0.86[ASN][1000 genomes]
rs11851257	0.90[AFR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12586702	0.86[ASN][1000 genomes]
rs1980521	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049097	chr14:65027753-65202018	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	esv1008915	chr14:65117194-65126733	ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65116800-65125000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:65117000-65128400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr14:65120200-65122200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr14:65120400-65121800	Enhancers	HSMMtube	muscle
5	chr14:65120400-65122000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr14:65120400-65122000	Enhancers	HSMM	muscle
7	chr14:65120400-65122000	Enhancers	NHLF	lung
8	chr14:65120400-65122200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr14:65120400-65122200	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr14:65120400-65122200	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr14:65120400-65122200	Enhancers	Muscle Satellite Cultured Cells	--
12	chr14:65120400-65122200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr14:65120400-65122200	Enhancers	Fetal Muscle Leg	muscle
14	chr14:65120400-65122600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr14:65120600-65121800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr14:65120600-65121800	Enhancers	HMEC	breast
17	chr14:65120600-65121800	Enhancers	HUVEC	blood vessel
18	chr14:65120600-65122000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr14:65120600-65122000	Enhancers	Primary hematopoietic stem cells	blood
20	chr14:65120600-65122000	Enhancers	NH-A	brain
21	chr14:65120600-65122200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr14:65120600-65122200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr14:65120600-65122200	Enhancers	Adipose Nuclei	Adipose
24	chr14:65120600-65122200	Enhancers	Liver	Liver
25	chr14:65120600-65122200	Enhancers	Colon Smooth Muscle	Colon
26	chr14:65120600-65122200	Enhancers	Placenta	Placenta
27	chr14:65120600-65122200	Enhancers	Rectal Smooth Muscle	rectum
28	chr14:65120600-65122200	Enhancers	Right Ventricle	heart
29	chr14:65120800-65121800	Weak transcription	Right Atrium	heart
30	chr14:65120800-65122200	Enhancers	Rectal Mucosa Donor 31	rectum
31	chr14:65121000-65121800	Flanking Active TSS	HepG2	liver
32	chr14:65121000-65122000	Enhancers	Fetal Heart	heart
33	chr14:65121000-65122000	Enhancers	Fetal Intestine Small	intestine
34	chr14:65121000-65122000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
35	chr14:65121000-65122200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr14:65121000-65122200	Enhancers	Fetal Stomach	stomach
37	chr14:65121000-65122200	Enhancers	Stomach Mucosa	stomach
38	chr14:65121000-65122200	Flanking Active TSS	Stomach Smooth Muscle	stomach
39	chr14:65121200-65121800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr14:65121200-65121800	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
41	chr14:65121200-65122000	Enhancers	HUES6 Cell Line	embryonic stem cell
42	chr14:65121200-65122000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
43	chr14:65121200-65122000	Enhancers	Fetal Intestine Large	intestine
44	chr14:65121200-65122000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
45	chr14:65121200-65122200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr14:65121200-65122200	Enhancers	Aorta	Aorta
47	chr14:65121200-65122200	Enhancers	Psoas Muscle	Psoas
48	chr14:65121200-65122200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
49	chr14:65121200-65122200	Enhancers	Spleen	Spleen
50	chr14:65121200-65123600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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