Variant report

Variant	rs1980521
Chromosome Location	chr14:65126004-65126005
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65091021..65092580-chr14:65124236..65126291,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10134174	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10134525	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11846264	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11849019	0.90[ASN][1000 genomes]
rs11851257	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12586702	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049097	chr14:65027753-65202018	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	esv1008915	chr14:65117194-65126733	ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65117000-65128400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr14:65121400-65126200	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr14:65121400-65126200	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr14:65122000-65128400	Weak transcription	HSMM	muscle
5	chr14:65122200-65126400	Weak transcription	Osteobl	bone
6	chr14:65122200-65128400	Weak transcription	Placenta	Placenta
7	chr14:65122200-65129600	Weak transcription	Fetal Muscle Trunk	muscle
8	chr14:65122200-65129800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr14:65122200-65129800	Weak transcription	A549	lung
10	chr14:65122600-65128400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr14:65124000-65129600	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr14:65124200-65128400	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr14:65124200-65129600	Weak transcription	Fetal Muscle Leg	muscle
14	chr14:65125200-65126400	Enhancers	Primary hematopoietic stem cells	blood
15	chr14:65125600-65126200	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
16	chr14:65125600-65126200	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
17	chr14:65125600-65126200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr14:65125600-65126200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr14:65125600-65126200	Enhancers	Dnd41	blood
20	chr14:65125600-65126600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr14:65125600-65127200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr14:65125800-65126200	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
23	chr14:65125800-65126200	Enhancers	Primary B cells from peripheral blood	blood
24	chr14:65125800-65126200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
25	chr14:65125800-65126200	Enhancers	Primary T helper cells fromperipheralblood	blood
26	chr14:65125800-65126200	Enhancers	NHDF-Ad	bronchial
27	chr14:65126000-65126200	Enhancers	Primary B cells from cord blood	blood
28	chr14:65126000-65126200	Flanking Active TSS	Primary T cells from cord blood	blood
29	chr14:65126000-65126200	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
30	chr14:65126000-65126200	Bivalent Enhancer	Primary T regulatory cells fromperipheralblood	blood
31	chr14:65126000-65126200	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
32	chr14:65126000-65126400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr14:65126000-65126400	Enhancers	Primary hematopoietic stem cells short term culture	blood
34	chr14:65126000-65126400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
35	chr14:65126000-65126400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr14:65126000-65127600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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