Variant report

Variant	rs7156649
Chromosome Location	chr14:65101240-65101241
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:64968284..64972899-chr14:65099732..65106261,9	MCF-7	breast:
2	chr14:65096029..65097733-chr14:65101219..65102871,2	MCF-7	breast:
3	chr14:65098847..65101532-chr14:65103067..65106443,3	MCF-7	breast:
4	chr14:64809273..64811150-chr14:65099348..65101805,2	MCF-7	breast:
5	chr14:65002195..65004790-chr14:65100149..65101871,2	MCF-7	breast:
6	chr14:65005746..65011576-chr14:65100375..65105465,11	MCF-7	breast:

Variant related genes	Relation type
ENSG00000126804	Chromatin interaction
ENSG00000259116	Chromatin interaction
ENSG00000089775	Chromatin interaction
ENSG00000126803	Chromatin interaction
ENSG00000259160	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10130241	0.82[ASN][1000 genomes]
rs10130755	0.87[ASN][1000 genomes]
rs10132794	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs10133861	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10134770	1.00[CHB][hapmap];0.91[CHD][hapmap];0.88[ASN][1000 genomes]
rs10138611	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10140678	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10144661	1.00[CHB][hapmap]
rs10145003	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10145101	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10145275	1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10145844	0.86[ASN][1000 genomes]
rs10150987	0.82[ASN][1000 genomes]
rs10151656	1.00[CHB][hapmap];0.91[CHD][hapmap];0.87[ASN][1000 genomes]
rs10467818	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10498516	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11158547	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11158548	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11158549	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.91[ASN][1000 genomes]
rs11844669	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11846008	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11846264	0.88[CHB][hapmap];0.88[GIH][hapmap]
rs11848587	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11849019	0.81[ASN][1000 genomes]
rs11850291	1.00[CHB][hapmap];0.87[CHD][hapmap];0.84[ASN][1000 genomes]
rs12586275	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12586702	0.81[ASN][1000 genomes]
rs12588437	0.84[ASN][1000 genomes]
rs12588509	1.00[CHB][hapmap];0.87[CHD][hapmap];0.84[ASN][1000 genomes]
rs17101956	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1955661	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1955662	1.00[CEU][hapmap];0.94[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1955663	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2123458	0.81[ASN][1000 genomes]
rs28714198	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28761289	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2884269	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56039018	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56396472	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61987035	0.82[ASN][1000 genomes]
rs61987036	0.84[ASN][1000 genomes]
rs61987038	0.82[ASN][1000 genomes]
rs7140482	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7148864	1.00[CHB][hapmap];0.94[CHD][hapmap];0.82[JPT][hapmap];0.92[ASN][1000 genomes]
rs7153518	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7160131	0.94[CHB][hapmap]
rs74056339	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs74056358	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs74056359	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8006017	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049097	chr14:65027753-65202018	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7156649	ZBTB25	cis	cerebellum	SCAN
rs7156649	ZBTB25	cis	multi-tissue	Pritchard

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65092600-65103000	Weak transcription	Fetal Muscle Leg	muscle
2	chr14:65093000-65103000	Weak transcription	Fetal Intestine Small	intestine
3	chr14:65095800-65103000	Weak transcription	Esophagus	oesophagus
4	chr14:65095800-65103000	Weak transcription	Stomach Mucosa	stomach
5	chr14:65096000-65101400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr14:65096000-65103000	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr14:65096000-65103000	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr14:65096000-65105600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr14:65096000-65106200	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr14:65096200-65101600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr14:65096200-65103000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr14:65096600-65103200	Weak transcription	NHEK	skin
13	chr14:65096800-65104200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr14:65096800-65104400	Weak transcription	NHDF-Ad	bronchial
15	chr14:65097800-65103200	Weak transcription	NHLF	lung
16	chr14:65098800-65101600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr14:65099200-65103200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr14:65099400-65111600	Weak transcription	Osteobl	bone
19	chr14:65099600-65102800	Weak transcription	Brain Angular Gyrus	brain
20	chr14:65099600-65103000	Weak transcription	Brain Anterior Caudate	brain
21	chr14:65099600-65103000	Weak transcription	Brain Cingulate Gyrus	brain
22	chr14:65099600-65103000	Weak transcription	Brain Hippocampus Middle	brain
23	chr14:65099600-65103000	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr14:65099600-65103000	Weak transcription	Brain Substantia Nigra	brain
25	chr14:65099600-65103000	Weak transcription	Rectal Smooth Muscle	rectum
26	chr14:65099600-65103200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr14:65099600-65104400	Weak transcription	Fetal Lung	lung
28	chr14:65100200-65101600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr14:65100200-65103000	Weak transcription	Fetal Intestine Large	intestine
30	chr14:65100200-65103000	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr14:65100400-65102800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr14:65100400-65102800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr14:65100400-65103000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr14:65100400-65103000	Weak transcription	Colonic Mucosa	Colon
35	chr14:65100400-65103000	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr14:65100400-65103200	Weak transcription	Primary B cells from peripheral blood	blood
37	chr14:65100600-65103000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr14:65100600-65103000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr14:65100600-65103000	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr14:65100600-65103200	Weak transcription	Spleen	Spleen
41	chr14:65100800-65103000	Weak transcription	Placenta	Placenta
42	chr14:65100800-65103000	Weak transcription	Hela-S3	cervix
43	chr14:65101000-65102000	Enhancers	A549	lung
44	chr14:65101200-65101800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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