Variant report

Variant	rs7160131
Chromosome Location	chr14:65031178-65031179
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65026787..65029450-chr14:65030177..65032001,2	K562	blood:
2	chr14:65024435..65026477-chr14:65030670..65033087,2	MCF-7	breast:

Extended variants
information (count: 57 )
Associated
traits (count: 8 )

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10131416	0.82[CEU][hapmap]
rs10132033	0.86[ASN][1000 genomes]
rs10132794	0.93[CHB][hapmap]
rs10133696	0.85[CEU][hapmap];0.81[GIH][hapmap];0.92[MEX][hapmap]
rs10134530	0.82[CEU][hapmap];0.81[GIH][hapmap];0.86[MEX][hapmap]
rs10134770	0.94[CHB][hapmap]
rs10136052	0.92[EUR][1000 genomes]
rs10136732	0.82[CEU][hapmap];0.81[GIH][hapmap];0.86[MEX][hapmap]
rs10142343	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10142536	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10142879	0.82[CEU][hapmap];0.93[MEX][hapmap]
rs10144661	0.94[CHB][hapmap];0.81[ASN][1000 genomes]
rs10145013	0.82[CEU][hapmap];0.81[GIH][hapmap];0.86[MEX][hapmap]
rs10145101	0.94[CHB][hapmap]
rs10145275	0.94[CHB][hapmap]
rs10150987	0.81[ASN][1000 genomes]
rs10151434	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10151656	0.94[CHB][hapmap]
rs10151970	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11158542	0.82[CEU][hapmap]
rs11158548	0.94[CHB][hapmap]
rs11158549	0.94[CHB][hapmap]
rs11625265	0.82[CEU][hapmap];0.81[GIH][hapmap];0.86[MEX][hapmap]
rs11627387	0.82[CEU][hapmap];0.81[GIH][hapmap]
rs11844669	0.94[CHB][hapmap]
rs11846264	0.83[CHB][hapmap]
rs11848587	0.94[CHB][hapmap]
rs11850291	0.94[CHB][hapmap];0.81[CHD][hapmap]
rs12050238	0.82[CEU][hapmap]
rs12050358	0.82[CEU][hapmap];0.81[GIH][hapmap];0.93[MEX][hapmap]
rs12588509	0.94[CHB][hapmap];0.81[CHD][hapmap]
rs1453007	0.82[CEU][hapmap]
rs1470851	0.82[CEU][hapmap];0.81[GIH][hapmap];0.93[MEX][hapmap]
rs1955661	0.94[CHB][hapmap]
rs1955662	0.88[CHB][hapmap]
rs1955663	0.94[CHB][hapmap]
rs1980520	0.82[CEU][hapmap];0.81[GIH][hapmap];0.93[MEX][hapmap]
rs2045024	0.82[CEU][hapmap];0.86[MEX][hapmap]
rs2123458	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2123459	0.82[CEU][hapmap];0.81[GIH][hapmap]
rs2123460	0.82[CEU][hapmap];0.81[GIH][hapmap];0.86[MEX][hapmap]
rs2198347	0.82[CEU][hapmap];0.81[GIH][hapmap];0.93[MEX][hapmap]
rs28730549	0.86[MEX][hapmap]
rs28766386	0.82[CEU][hapmap];0.86[MEX][hapmap]
rs3742606	0.82[CEU][hapmap];0.86[MEX][hapmap]
rs56690759	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61987034	0.92[ASN][1000 genomes]
rs61987035	0.81[ASN][1000 genomes]
rs61987038	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6573559	0.82[CEU][hapmap];0.81[GIH][hapmap]
rs7148864	0.94[CHB][hapmap]
rs7149587	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7156649	0.94[CHB][hapmap]
rs7160634	0.86[MEX][hapmap]
rs926803	0.86[MEX][hapmap]
rs9323450	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049097	chr14:65027753-65202018	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

mRNA abundance (count:8)

SNP	Gene	Cis/trans	Tissue	Source
rs7160131	ZBTB25	cis	cerebellum	SCAN
rs7160131	WDR89	cis	cerebellum	SCAN
rs7160131	ZBTB25	cis	lymphoblastoid	seeQTL
rs7160131	ZBTB25	cis	multi-tissue	Pritchard
rs7160131	ZBTB1	cis	cerebellum	SCAN
rs7160131	ZBTB25	cis	Nerve Tibial	GTEx
rs7160131	PLEK2	cis	cerebellum	SCAN
rs7160131	ARG2	cis	parietal	SCAN

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65021400-65033400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:65021600-65047600	Weak transcription	Pancreas	Pancrea
3	chr14:65023400-65033400	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr14:65028000-65033400	Weak transcription	Psoas Muscle	Psoas
5	chr14:65028200-65031600	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr14:65028200-65033400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr14:65028200-65033400	Weak transcription	A549	lung
8	chr14:65028200-65039400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr14:65028400-65033400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr14:65028400-65033400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr14:65028800-65033400	Weak transcription	Hela-S3	cervix
12	chr14:65029200-65031800	Enhancers	Brain Anterior Caudate	brain
13	chr14:65029200-65032200	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr14:65029200-65033200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr14:65029200-65033200	Enhancers	Brain Substantia Nigra	brain
16	chr14:65029200-65035800	Weak transcription	Placenta	Placenta
17	chr14:65029400-65033200	Weak transcription	Adipose Nuclei	Adipose
18	chr14:65029400-65033200	Weak transcription	Right Atrium	heart
19	chr14:65029400-65035600	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr14:65029400-65039400	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr14:65030200-65031600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr14:65030400-65033200	Weak transcription	Brain Angular Gyrus	brain
23	chr14:65030600-65032400	Enhancers	Brain Cingulate Gyrus	brain
24	chr14:65030600-65033200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr14:65030600-65033200	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr14:65030600-65039600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr14:65030800-65031200	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr14:65030800-65031400	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr14:65030800-65033200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr14:65030800-65033400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr14:65030800-65034600	Enhancers	Brain Hippocampus Middle	brain
32	chr14:65031000-65033200	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr14:65031000-65033200	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr14:65031000-65035800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr14:65031000-65035800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr14:65031000-65039000	Weak transcription	H1 Cell Line	embryonic stem cell

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