Variant report

Variant	rs926803
Chromosome Location	chr14:64977739-64977740
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:64896419..64897383-chr14:64977488..64978469,2	MCF-7	breast:
2	chr14:64945492..64946116-chr14:64977349..64978438,3	MCF-7	breast:
3	chr14:64854562..64856178-chr14:64977120..64979852,2	K562	blood:
4	chr14:64810341..64812105-chr14:64976610..64978865,2	MCF-7	breast:
5	chr14:64810613..64811246-chr14:64977702..64978451,2	K562	blood:
6	chr14:64812043..64814935-chr14:64975290..64978233,2	K562	blood:

Variant related genes	Relation type
ENSG00000100714	Chromatin interaction

Extended variants
information (count: 103 )
Associated
traits (count: 9 )

rSNPs within LD-proxies of this variant (count:102)

rs_ID	r²[population]
rs10131155	0.85[ASN][1000 genomes]
rs10131416	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10132424	0.93[CHB][hapmap];0.83[JPT][hapmap];0.81[ASN][1000 genomes]
rs10132969	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10133243	0.83[CHB][hapmap];0.83[JPT][hapmap];0.84[ASN][1000 genomes]
rs10133411	0.93[CHB][hapmap];0.82[CHD][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs10133696	1.00[CHB][hapmap];0.94[CHD][hapmap];0.87[GIH][hapmap];0.83[JPT][hapmap];0.93[MEX][hapmap];0.86[TSI][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10133848	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10134530	0.87[GIH][hapmap];0.87[MEX][hapmap];0.89[TSI][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10136732	0.87[GIH][hapmap];0.87[MEX][hapmap];0.89[TSI][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10138256	0.83[ASN][1000 genomes]
rs10142835	0.90[CHB][hapmap];0.83[ASN][1000 genomes]
rs10142879	1.00[CHB][hapmap];0.94[CHD][hapmap];0.84[GIH][hapmap];0.83[JPT][hapmap];0.94[MEX][hapmap];0.89[TSI][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10143170	0.83[ASN][1000 genomes]
rs10143839	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10145001	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10145005	0.90[EUR][1000 genomes]
rs10145013	0.87[GIH][hapmap];0.87[MEX][hapmap];0.89[TSI][hapmap];0.90[EUR][1000 genomes]
rs10147522	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10149286	0.83[ASN][1000 genomes]
rs10150781	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10873173	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11158542	0.85[GIH][hapmap];0.89[TSI][hapmap];0.81[EUR][1000 genomes]
rs11158543	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11158544	0.83[ASN][1000 genomes]
rs11623457	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11625265	1.00[CHB][hapmap];0.94[CHD][hapmap];0.87[GIH][hapmap];0.83[JPT][hapmap];0.87[MEX][hapmap];0.86[TSI][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11626222	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11627122	0.80[EUR][1000 genomes]
rs11627387	0.87[GIH][hapmap];0.86[TSI][hapmap];0.86[EUR][1000 genomes]
rs11628221	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11845653	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11847054	0.83[ASN][1000 genomes]
rs11848179	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11849935	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11851236	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12050238	1.00[CHB][hapmap];0.83[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12050358	1.00[CHB][hapmap];0.94[CHD][hapmap];0.87[GIH][hapmap];0.83[JPT][hapmap];0.94[MEX][hapmap];0.89[TSI][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12385910	0.93[CHB][hapmap];0.83[JPT][hapmap];0.84[ASN][1000 genomes]
rs12385918	0.93[CHB][hapmap];0.82[CHD][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs12586212	0.85[ASN][1000 genomes]
rs12588886	0.84[CHB][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs12589947	0.84[ASN][1000 genomes]
rs1453004	0.93[CHB][hapmap];0.82[CHD][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs1453007	0.93[CHB][hapmap];0.83[JPT][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1453009	0.93[CHB][hapmap];0.82[CHD][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs1470851	1.00[CHB][hapmap];0.94[CHD][hapmap];0.87[GIH][hapmap];0.83[JPT][hapmap];0.94[MEX][hapmap];0.89[TSI][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17101896	0.83[ASN][1000 genomes]
rs1966865	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1980519	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1980520	1.00[CHB][hapmap];0.94[CHD][hapmap];0.87[GIH][hapmap];0.83[JPT][hapmap];0.94[MEX][hapmap];0.89[TSI][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1982440	0.93[CHB][hapmap];0.82[CHD][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs2045024	0.85[GIH][hapmap];0.87[MEX][hapmap];0.89[TSI][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2123459	0.87[GIH][hapmap];0.89[TSI][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2123460	0.87[GIH][hapmap];0.87[MEX][hapmap];0.89[TSI][hapmap];0.89[EUR][1000 genomes]
rs2198347	1.00[CHB][hapmap];0.94[CHD][hapmap];0.87[GIH][hapmap];0.83[JPT][hapmap];0.94[MEX][hapmap];0.89[TSI][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28446048	0.85[ASN][1000 genomes]
rs28469649	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28626711	0.83[ASN][1000 genomes]
rs28666045	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28730549	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28738919	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28766386	0.85[GIH][hapmap];0.87[MEX][hapmap];0.89[TSI][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28827477	0.83[EUR][1000 genomes]
rs35115595	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35451957	0.83[ASN][1000 genomes]
rs3742606	0.85[GIH][hapmap];0.87[MEX][hapmap];0.89[TSI][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3742608	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3783722	0.93[CHB][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs3783723	0.85[ASN][1000 genomes]
rs3783724	0.93[CHB][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs3783725	0.87[EUR][1000 genomes]
rs3783727	0.92[EUR][1000 genomes]
rs4632045	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57525201	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs58893738	0.83[ASN][1000 genomes]
rs59213791	0.82[ASN][1000 genomes]
rs59440409	0.84[ASN][1000 genomes]
rs59512674	0.83[ASN][1000 genomes]
rs59577187	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs60908674	0.84[ASN][1000 genomes]
rs61615397	0.84[ASN][1000 genomes]
rs61985663	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61985668	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61985706	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61985707	0.85[ASN][1000 genomes]
rs61985711	0.83[ASN][1000 genomes]
rs6573559	0.87[GIH][hapmap];0.81[MEX][hapmap];0.86[TSI][hapmap];0.87[EUR][1000 genomes]
rs7160131	0.86[MEX][hapmap]
rs7160634	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73265639	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73265640	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73265641	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73267743	0.85[ASN][1000 genomes]
rs73267744	0.85[ASN][1000 genomes]
rs745686	1.00[CEU][hapmap];0.90[GIH][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs8016556	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs8022537	0.87[EUR][1000 genomes]
rs8022545	0.87[EUR][1000 genomes]
rs9323450	0.81[TSI][hapmap]
rs9323451	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9323452	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521823	chr14:64969342-64995694	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases

mRNA abundance (count:9)

SNP	Gene	Cis/trans	Tissue	Source
rs926803	SYT16	cis	parietal	SCAN
rs926803	MTHFD1	cis	cerebellum	SCAN
rs926803	ZBTB25	cis	multi-tissue	Pritchard
rs926803	ZBTB25	cis	Lymphoblastoid	GTEx
rs926803	ZBTB1	cis	cerebellum	SCAN
rs926803	ZBTB1	cis	lymphoblastoid	seeQTL
rs926803	ZBTB25	cis	lymphoblastoid	seeQTL
rs926803	ZBTB25	cis	cerebellum	SCAN
rs926803	ZBTB25	cis	parietal	SCAN

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64972800-64978800	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr14:64972800-64979200	Enhancers	Small Intestine	intestine
3	chr14:64972800-64988400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr14:64972800-64991600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr14:64973000-64979400	Enhancers	Primary B cells from peripheral blood	blood
6	chr14:64973200-64987800	Weak transcription	Fetal Muscle Trunk	muscle
7	chr14:64973800-64978000	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr14:64973800-64978400	Enhancers	HepG2	liver
9	chr14:64973800-64979400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr14:64973800-64980000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr14:64974000-64984400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr14:64974200-64979400	Enhancers	Primary B cells from cord blood	blood
13	chr14:64974400-64977800	Weak transcription	Fetal Lung	lung
14	chr14:64974400-64978000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr14:64974400-64988200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr14:64974400-64988400	Weak transcription	Stomach Smooth Muscle	stomach
17	chr14:64974600-64978200	Enhancers	Primary T cells fromperipheralblood	blood
18	chr14:64974800-64978400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr14:64974800-64978400	Weak transcription	NH-A	brain
20	chr14:64974800-64979200	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr14:64974800-64980000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
22	chr14:64974800-64988600	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr14:64974800-64999400	Weak transcription	Fetal Brain Male	brain
24	chr14:64974800-65006000	Weak transcription	Ovary	ovary
25	chr14:64975000-64988400	Weak transcription	HSMMtube	muscle
26	chr14:64975200-64978200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr14:64975200-64978400	Enhancers	Hela-S3	cervix
28	chr14:64975200-64987600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
29	chr14:64975200-64988200	Weak transcription	Fetal Muscle Leg	muscle
30	chr14:64975200-64988600	Weak transcription	Fetal Stomach	stomach
31	chr14:64975400-64977800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
32	chr14:64975400-64978800	Enhancers	Breast Myoepithelial Primary Cells	Breast
33	chr14:64976000-64978000	Enhancers	Dnd41	blood
34	chr14:64976000-64978200	Enhancers	K562	blood
35	chr14:64976000-64978400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr14:64976000-64981000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr14:64976000-64981000	Weak transcription	Aorta	Aorta
38	chr14:64976000-64988400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr14:64976000-64995400	Weak transcription	Gastric	stomach
40	chr14:64976000-64996600	Weak transcription	Esophagus	oesophagus
41	chr14:64976000-65006000	Weak transcription	Brain Germinal Matrix	brain
42	chr14:64976200-64979600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr14:64976200-64980000	Enhancers	Primary T helper naive cells from peripheral blood	blood
44	chr14:64976200-64988200	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr14:64976200-64988200	Weak transcription	Fetal Intestine Large	intestine
46	chr14:64976200-64988200	Weak transcription	Placenta	Placenta
47	chr14:64976200-64988600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr14:64976200-64991800	Weak transcription	Stomach Mucosa	stomach
49	chr14:64976600-64977800	Enhancers	iPS-20b Cell Line	embryonic stem cell
50	chr14:64976600-64978400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood

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