Variant report

Variant	rs10133243
Chromosome Location	chr14:64981525-64981526
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:64980297..64983201-chr14:65006047..65009570,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000126803	Chromatin interaction
ENSG00000259116	Chromatin interaction

Extended variants
information (count: 75 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10131155	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10132424	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10132794	0.87[CEU][hapmap]
rs10133411	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10133696	0.83[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs10134530	1.00[YRI][hapmap]
rs10136732	1.00[YRI][hapmap]
rs10138256	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10142835	1.00[CEU][hapmap];0.89[CHB][hapmap];0.91[JPT][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10142879	0.83[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[ASN][1000 genomes]
rs10143170	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10144661	0.83[CEU][hapmap]
rs10145013	1.00[YRI][hapmap]
rs10149286	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10873173	0.91[ASN][1000 genomes]
rs11158543	0.84[ASN][1000 genomes]
rs11158544	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11623457	0.89[ASN][1000 genomes]
rs11625265	0.83[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs11628221	0.91[ASN][1000 genomes]
rs11847054	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11848179	0.96[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs11849530	1.00[CEU][hapmap]
rs11850291	0.82[CEU][hapmap]
rs11851236	0.83[CHB][hapmap];0.84[JPT][hapmap];0.84[ASN][1000 genomes]
rs12050238	0.83[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs12050358	0.83[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[ASN][1000 genomes]
rs12385910	0.92[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12385918	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12586212	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12588509	0.82[CEU][hapmap]
rs12588886	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12589947	0.90[CHB][hapmap];0.86[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1453004	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1453007	0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs1453009	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1470851	0.83[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs17101896	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1966865	0.96[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs1980519	0.91[ASN][1000 genomes]
rs1980520	0.83[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[ASN][1000 genomes]
rs1982440	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2123459	0.82[YRI][hapmap]
rs2123460	1.00[YRI][hapmap]
rs2198347	0.83[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs2281603	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs28446048	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28469649	0.96[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs28626711	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28666045	0.88[ASN][1000 genomes]
rs28730549	0.83[CHB][hapmap];0.83[JPT][hapmap];0.84[ASN][1000 genomes]
rs28738919	0.89[ASN][1000 genomes]
rs35451957	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3783722	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3783723	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3783724	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3783726	0.94[CEU][hapmap];0.84[EUR][1000 genomes]
rs45618332	0.81[EUR][1000 genomes]
rs4632045	0.91[ASN][1000 genomes]
rs58893738	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59213791	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59440409	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59512674	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60908674	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61615397	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61985668	0.89[ASN][1000 genomes]
rs61985706	0.96[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs61985707	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61985711	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7160634	0.83[CHB][hapmap];0.83[JPT][hapmap];0.82[ASN][1000 genomes]
rs73267743	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73267744	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs926803	0.83[CHB][hapmap];0.83[JPT][hapmap];0.84[ASN][1000 genomes]
rs9323452	0.96[AFR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521823	chr14:64969342-64995694	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs10133243	ZBTB25	cis	Nerve Tibial	GTEx
rs10133243	ZBTB25	cis	multi-tissue	Pritchard
rs10133243	ZBTB1	Cis_1M	lymphoblastoid	RTeQTL
rs10133243	ZBTB25	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64972800-64988400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr14:64972800-64991600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr14:64973200-64987800	Weak transcription	Fetal Muscle Trunk	muscle
4	chr14:64974000-64984400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr14:64974400-64988200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr14:64974400-64988400	Weak transcription	Stomach Smooth Muscle	stomach
7	chr14:64974800-64988600	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr14:64974800-64999400	Weak transcription	Fetal Brain Male	brain
9	chr14:64974800-65006000	Weak transcription	Ovary	ovary
10	chr14:64975000-64988400	Weak transcription	HSMMtube	muscle
11	chr14:64975200-64987600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr14:64975200-64988200	Weak transcription	Fetal Muscle Leg	muscle
13	chr14:64975200-64988600	Weak transcription	Fetal Stomach	stomach
14	chr14:64976000-64988400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr14:64976000-64995400	Weak transcription	Gastric	stomach
16	chr14:64976000-64996600	Weak transcription	Esophagus	oesophagus
17	chr14:64976000-65006000	Weak transcription	Brain Germinal Matrix	brain
18	chr14:64976200-64988200	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr14:64976200-64988200	Weak transcription	Fetal Intestine Large	intestine
20	chr14:64976200-64988200	Weak transcription	Placenta	Placenta
21	chr14:64976200-64988600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr14:64976200-64991800	Weak transcription	Stomach Mucosa	stomach
23	chr14:64976800-64982600	Weak transcription	Left Ventricle	heart
24	chr14:64977600-64988200	Weak transcription	Right Ventricle	heart
25	chr14:64977800-64981600	Enhancers	Primary T cells from cord blood	blood
26	chr14:64977800-64982000	Enhancers	Primary T killer memory cells from peripheral blood	blood
27	chr14:64977800-64983200	Enhancers	Primary T helper cells fromperipheralblood	blood
28	chr14:64977800-64988400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr14:64977800-64991600	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr14:64977800-64992200	Weak transcription	Colonic Mucosa	Colon
31	chr14:64977800-64993600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr14:64978000-64983200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr14:64978000-64983400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr14:64978000-64986400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr14:64978000-64987600	Weak transcription	Fetal Intestine Small	intestine
36	chr14:64978000-64987600	Weak transcription	Thymus	Thymus
37	chr14:64978000-64988600	Weak transcription	Fetal Kidney	kidney
38	chr14:64978200-64986200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr14:64978200-64987800	Weak transcription	HUES64 Cell Line	embryonic stem cell
40	chr14:64978200-64988200	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr14:64978200-64988200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr14:64978200-64988400	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr14:64978200-64988400	Weak transcription	Fetal Lung	lung
44	chr14:64978200-64989400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr14:64978200-65006000	Weak transcription	Brain Cingulate Gyrus	brain
46	chr14:64978400-64986600	Weak transcription	HUVEC	blood vessel
47	chr14:64978400-64988400	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr14:64978400-64988400	Weak transcription	HepG2	liver
49	chr14:64978400-64988600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
50	chr14:64978400-64992200	Weak transcription	Brain Inferior Temporal Lobe	brain

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