Variant report

Variant	rs10145013
Chromosome Location	chr14:64941591-64941592
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:64936676..64945278-chr14:64966734..64972845,13	MCF-7	breast:

Variant related genes	Relation type
ENSG00000126804	Chromatin interaction
ENSG00000089775	Chromatin interaction

Extended variants
information (count: 79 )
Associated
traits (count: 10 )

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10131416	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10132424	1.00[YRI][hapmap]
rs10132969	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10133243	1.00[YRI][hapmap]
rs10133411	0.84[ASW][hapmap];0.84[GIH][hapmap];0.83[MKK][hapmap];1.00[YRI][hapmap]
rs10133696	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.93[MEX][hapmap];0.91[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10133848	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10134530	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10136732	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10142835	1.00[YRI][hapmap]
rs10142879	1.00[ASW][hapmap];1.00[CEU][hapmap];0.97[GIH][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10143839	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10144661	0.85[YRI][hapmap]
rs10145001	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10145005	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10147522	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10149286	1.00[YRI][hapmap]
rs10150781	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10873173	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11158542	1.00[CEU][hapmap];0.97[GIH][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs11158543	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11623457	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11625265	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.87[MEX][hapmap];0.91[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11626222	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11627387	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];0.87[MEX][hapmap];0.97[TSI][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11628221	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11845653	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11848179	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11849935	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11851236	0.91[EUR][1000 genomes]
rs12050238	1.00[CEU][hapmap];0.82[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12050358	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12385918	0.84[ASW][hapmap];0.85[GIH][hapmap];0.83[MKK][hapmap];1.00[YRI][hapmap]
rs12588886	1.00[YRI][hapmap]
rs12589947	1.00[YRI][hapmap]
rs1453004	0.84[ASW][hapmap];0.85[GIH][hapmap];0.83[MKK][hapmap];1.00[YRI][hapmap]
rs1453007	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1453009	0.84[ASW][hapmap];0.85[GIH][hapmap];0.83[MKK][hapmap];1.00[YRI][hapmap]
rs1470851	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.94[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1966865	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1980519	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1980520	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1982440	0.87[GIH][hapmap];0.83[MKK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs2045024	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2123459	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.88[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2123460	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2198347	1.00[CEU][hapmap];1.00[GIH][hapmap];0.94[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2281603	0.81[GIH][hapmap];0.83[MKK][hapmap];1.00[YRI][hapmap]
rs28469649	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28666045	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28730549	0.92[GIH][hapmap];0.87[MEX][hapmap];0.89[TSI][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28738919	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs28766386	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28827477	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35115595	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3742606	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3742608	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3783722	1.00[YRI][hapmap]
rs3783724	1.00[YRI][hapmap]
rs3783727	0.84[EUR][1000 genomes]
rs4632045	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs57525201	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59213791	0.83[AFR][1000 genomes]
rs59577187	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61985663	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61985668	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61985706	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6573559	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];0.81[MEX][hapmap];0.97[TSI][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7160131	0.82[CEU][hapmap];0.81[GIH][hapmap];0.86[MEX][hapmap]
rs7160634	0.90[GIH][hapmap];0.87[MEX][hapmap];0.89[TSI][hapmap];0.85[EUR][1000 genomes]
rs73265639	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73265640	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73265641	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs745686	0.87[GIH][hapmap];0.89[TSI][hapmap];0.85[EUR][1000 genomes]
rs926803	0.87[GIH][hapmap];0.87[MEX][hapmap];0.89[TSI][hapmap];0.90[EUR][1000 genomes]
rs9323450	1.00[CEU][hapmap];0.85[TSI][hapmap]
rs9323451	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9323452	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902022	chr14:64926581-64958638	Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:10)

SNP	Gene	Cis/trans	Tissue	Source
rs10145013	ZBTB25	cis	multi-tissue	Pritchard
rs10145013	ZBTB25	cis	cerebellum	SCAN
rs10145013	ZBTB25	Cis_1M	lymphoblastoid	RTeQTL
rs10145013	ZBTB25	cis	Nerve Tibial	GTEx
rs10145013	ZBTB1	Cis_1M	lymphoblastoid	RTeQTL
rs10145013	ZBTB1	cis	lymphoblastoid	seeQTL
rs10145013	ZBTB25	cis	parietal	SCAN
rs10145013	ZBTB25	cis	lymphoblastoid	seeQTL
rs10145013	ZBTB1	cis	cerebellum	SCAN
rs10145013	ZBTB25	cis	lung	GTEx

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64928200-64948000	Weak transcription	Hela-S3	cervix
2	chr14:64933000-64944400	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr14:64933000-64946000	Weak transcription	Left Ventricle	heart
4	chr14:64933000-64946600	Weak transcription	Fetal Thymus	thymus
5	chr14:64933000-64951000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr14:64933000-64951000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr14:64933000-64951600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr14:64933000-64951800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr14:64933000-64952000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr14:64933000-64953400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr14:64933000-64953600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr14:64933000-64953600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr14:64933000-64953600	Weak transcription	Lung	lung
14	chr14:64933000-64953600	Weak transcription	Ovary	ovary
15	chr14:64933000-64953600	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr14:64933000-64953600	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr14:64933000-64953600	Weak transcription	HSMM	muscle
18	chr14:64933000-64953600	Weak transcription	NHLF	lung
19	chr14:64933200-64944600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr14:64933200-64951000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr14:64933200-64951000	Weak transcription	Primary B cells from peripheral blood	blood
22	chr14:64933200-64951000	Weak transcription	Stomach Smooth Muscle	stomach
23	chr14:64933200-64951600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr14:64933200-64951800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr14:64933200-64953600	Weak transcription	Primary B cells from cord blood	blood
26	chr14:64933200-64953600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr14:64933200-64953600	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr14:64933200-64953600	Weak transcription	NHEK	skin
29	chr14:64933200-64953800	Weak transcription	Fetal Brain Female	brain
30	chr14:64933200-64953800	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr14:64933200-64968400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr14:64933400-64946000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr14:64933400-64946400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr14:64933400-64953600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr14:64933400-64953600	Weak transcription	Brain Hippocampus Middle	brain
36	chr14:64933400-64953600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr14:64933400-64953600	Weak transcription	Fetal Stomach	stomach
38	chr14:64933400-64953600	Weak transcription	NH-A	brain
39	chr14:64933400-64968200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
40	chr14:64933600-64951600	Weak transcription	Brain Angular Gyrus	brain
41	chr14:64933600-64953600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr14:64933800-64950600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr14:64934000-64953600	Weak transcription	Thymus	Thymus
44	chr14:64934200-64953800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
45	chr14:64934400-64951000	Weak transcription	Liver	Liver
46	chr14:64934400-64953600	Weak transcription	Adipose Nuclei	Adipose
47	chr14:64934600-64942200	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr14:64934800-64951800	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr14:64935200-64951200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr14:64935200-64951600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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