Variant report

Variant	rs2281603
Chromosome Location	chr14:64926097-64926098
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr14:64925465-64926507	HepG2	liver:	n/a	n/a
2	POLR2A	chr14:64925944-64926418	Hela-S3	cervix:	n/a	n/a
3	POLR2A	chr14:64924589-64927206	K562	blood:	n/a	n/a
4	POLR2A	chr14:64925429-64927092	SK-N-MC	brain:	n/a	n/a
5	EP300	chr14:64926089-64926257	K562	blood:	n/a	n/a
6	POLR2A	chr14:64926031-64926335	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:64925585..64927695-chr14:64931380..64933334,2	K562	blood:
2	chr14:64919296..64921199-chr14:64925016..64927012,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000272828	TF binding region
ENSG00000179841	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10132424	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs10132794	0.87[CEU][hapmap]
rs10133243	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs10133411	1.00[CEU][hapmap];0.92[GIH][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap]
rs10133696	0.81[GIH][hapmap];1.00[LWK][hapmap];0.91[MKK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs10134530	0.81[GIH][hapmap];0.83[MKK][hapmap];1.00[YRI][hapmap]
rs10134770	0.91[MKK][hapmap]
rs10136732	0.84[ASW][hapmap];0.81[GIH][hapmap];1.00[LWK][hapmap];0.90[MKK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs10142835	1.00[CEU][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs10142879	0.83[MKK][hapmap];1.00[YRI][hapmap]
rs10144661	0.84[CEU][hapmap];0.85[YRI][hapmap]
rs10145013	0.81[GIH][hapmap];0.83[MKK][hapmap];1.00[YRI][hapmap]
rs10149286	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs10151656	0.91[MKK][hapmap]
rs11625265	0.81[GIH][hapmap];0.91[MKK][hapmap];1.00[YRI][hapmap]
rs11627387	0.81[GIH][hapmap]
rs11848179	0.83[AFR][1000 genomes]
rs11849530	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11850291	0.84[ASW][hapmap];0.84[CEU][hapmap];0.91[MKK][hapmap]
rs12050238	0.82[YRI][hapmap]
rs12050358	0.81[GIH][hapmap];0.83[MKK][hapmap];1.00[YRI][hapmap]
rs12385918	1.00[CEU][hapmap];0.92[GIH][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap]
rs12586212	0.87[AFR][1000 genomes]
rs12588509	0.84[ASW][hapmap];0.84[CEU][hapmap];0.91[MKK][hapmap]
rs12588886	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs12589947	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs1453004	1.00[CEU][hapmap];0.92[GIH][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap]
rs1453007	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs1453009	1.00[CEU][hapmap];0.92[GIH][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap]
rs1470851	0.81[GIH][hapmap];0.91[MKK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs1966865	0.83[AFR][1000 genomes]
rs1980520	0.81[GIH][hapmap];0.83[MKK][hapmap];1.00[YRI][hapmap]
rs1982440	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs2123459	0.81[GIH][hapmap];0.83[MKK][hapmap];0.85[YRI][hapmap]
rs2123460	0.81[GIH][hapmap];0.83[MKK][hapmap];1.00[YRI][hapmap]
rs2198347	0.84[ASW][hapmap];0.81[GIH][hapmap];1.00[LWK][hapmap];0.91[MKK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs28446048	0.87[AFR][1000 genomes]
rs28469649	0.83[AFR][1000 genomes]
rs3783722	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs3783723	0.87[AFR][1000 genomes]
rs3783724	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs3783726	0.94[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3818240	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57900243	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58001647	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59213791	0.95[AFR][1000 genomes]
rs59440409	0.87[AFR][1000 genomes]
rs60908674	0.87[AFR][1000 genomes]
rs61615397	0.87[AFR][1000 genomes]
rs61985706	0.83[AFR][1000 genomes]
rs61985707	0.87[AFR][1000 genomes]
rs6573559	0.81[GIH][hapmap]
rs73267743	0.87[AFR][1000 genomes]
rs73267744	0.87[AFR][1000 genomes]
rs9323452	0.83[AFR][1000 genomes]

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs2281603	ZBTB25	cis	Nerve Tibial	GTEx
rs2281603	ZBTB1	Cis_1M	lymphoblastoid	RTeQTL
rs2281603	ZBTB1	cis	cerebellum	SCAN
rs2281603	ZBTB25	Cis_1M	lymphoblastoid	RTeQTL
rs2281603	ZBTB25	cis	lymphoblastoid	seeQTL
rs2281603	ZBTB25	cis	cerebellum	SCAN

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64856200-64931200	Weak transcription	Stomach Mucosa	stomach
2	chr14:64861800-64931600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr14:64867200-64927000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
4	chr14:64867200-64929600	Strong transcription	Dnd41	blood
5	chr14:64874000-64928400	Strong transcription	HUES48 Cell Line	embryonic stem cell
6	chr14:64877000-64927000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr14:64877000-64929400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr14:64877400-64928200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr14:64877800-64929200	Strong transcription	H1 Cell Line	embryonic stem cell
10	chr14:64881600-64929000	Strong transcription	Fetal Thymus	thymus
11	chr14:64891200-64928600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr14:64900400-64931800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr14:64905800-64931400	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr14:64910600-64931200	Weak transcription	Fetal Heart	heart
15	chr14:64911200-64931400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr14:64911800-64931400	Weak transcription	Colon Smooth Muscle	Colon
17	chr14:64912200-64929600	Strong transcription	HUES6 Cell Line	embryonic stem cell
18	chr14:64912400-64930200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr14:64912600-64926800	Strong transcription	HUES64 Cell Line	embryonic stem cell
20	chr14:64912600-64929600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
21	chr14:64913400-64929600	Strong transcription	Fetal Stomach	stomach
22	chr14:64913600-64929000	Strong transcription	H9 Cell Line	embryonic stem cell
23	chr14:64913600-64929200	Strong transcription	Fetal Muscle Trunk	muscle
24	chr14:64913800-64931200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr14:64914200-64927200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr14:64914200-64927400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
27	chr14:64914400-64926400	Strong transcription	A549	lung
28	chr14:64914400-64927000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr14:64914400-64927000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr14:64914800-64926400	Strong transcription	Fetal Brain Female	brain
31	chr14:64914800-64926800	Strong transcription	Primary hematopoietic stem cells	blood
32	chr14:64915000-64931000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr14:64915200-64927000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
34	chr14:64915400-64929800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr14:64915400-64931200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr14:64917000-64927200	Strong transcription	NHDF-Ad	bronchial
37	chr14:64917400-64927400	Strong transcription	GM12878-XiMat	blood
38	chr14:64917400-64930800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chr14:64918400-64928200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr14:64920000-64927000	Strong transcription	HMEC	breast
41	chr14:64920000-64929600	Strong transcription	Fetal Muscle Leg	muscle
42	chr14:64920200-64926400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr14:64920200-64928200	Strong transcription	Hela-S3	cervix
44	chr14:64920400-64927000	Strong transcription	ES-I3 Cell Line	embryonic stem cell
45	chr14:64920800-64931400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr14:64921000-64931200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr14:64921000-64931200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr14:64921200-64926800	Strong transcription	NHLF	lung
49	chr14:64921600-64928600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr14:64921600-64929800	Strong transcription	Liver	Liver

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