Variant report

Variant	rs10142879
Chromosome Location	chr14:64965842-64965843
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 99 )
Associated
traits (count: 10 )

rSNPs within LD-proxies of this variant (count:99)

rs_ID	r²[population]
rs10131155	0.92[ASN][1000 genomes]
rs10131416	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10132424	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[ASN][1000 genomes]
rs10132969	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10133243	0.83[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[ASN][1000 genomes]
rs10133411	0.84[ASW][hapmap];0.93[CHB][hapmap];0.88[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.83[MKK][hapmap];1.00[YRI][hapmap];0.90[ASN][1000 genomes]
rs10133696	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10133848	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10134530	1.00[ASW][hapmap];1.00[CEU][hapmap];0.97[GIH][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10136732	1.00[CEU][hapmap];0.97[GIH][hapmap];0.94[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10138256	0.90[ASN][1000 genomes]
rs10142835	0.90[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.90[ASN][1000 genomes]
rs10143170	0.90[ASN][1000 genomes]
rs10143839	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10144661	0.85[YRI][hapmap]
rs10145001	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10145005	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10145013	1.00[ASW][hapmap];1.00[CEU][hapmap];0.97[GIH][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10147522	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10149286	1.00[YRI][hapmap];0.90[ASN][1000 genomes]
rs10150781	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10873173	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11158542	1.00[CEU][hapmap];0.95[GIH][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes]
rs11158543	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11158544	0.90[ASN][1000 genomes]
rs11623457	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11625265	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.91[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11626222	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11627387	1.00[CEU][hapmap];0.97[GIH][hapmap];0.81[MEX][hapmap];0.97[TSI][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11628221	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11845653	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11847054	0.90[ASN][1000 genomes]
rs11848179	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11849935	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11851236	1.00[CHB][hapmap];0.83[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12050238	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12050358	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12385910	0.93[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12385918	0.84[ASW][hapmap];0.93[CHB][hapmap];0.88[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.83[MKK][hapmap];1.00[YRI][hapmap];0.90[ASN][1000 genomes]
rs12586212	0.92[ASN][1000 genomes]
rs12588886	0.84[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[ASN][1000 genomes]
rs12589947	0.85[JPT][hapmap];1.00[YRI][hapmap];0.91[ASN][1000 genomes]
rs1453004	0.84[ASW][hapmap];0.93[CHB][hapmap];0.88[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.83[MKK][hapmap];1.00[YRI][hapmap];0.90[ASN][1000 genomes]
rs1453007	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1453009	0.84[ASW][hapmap];0.93[CHB][hapmap];0.88[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.83[MKK][hapmap];1.00[YRI][hapmap];0.90[ASN][1000 genomes]
rs1470851	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17101896	0.90[ASN][1000 genomes]
rs1966865	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1980519	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1980520	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1982440	0.93[CHB][hapmap];0.88[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.83[MKK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs2045024	1.00[CEU][hapmap];0.95[GIH][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2123459	1.00[ASW][hapmap];1.00[CEU][hapmap];0.97[GIH][hapmap];0.87[LWK][hapmap];0.82[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2123460	1.00[ASW][hapmap];1.00[CEU][hapmap];0.97[GIH][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2198347	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2281603	0.83[MKK][hapmap];1.00[YRI][hapmap]
rs28446048	0.92[ASN][1000 genomes]
rs28469649	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28626711	0.90[ASN][1000 genomes]
rs28666045	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28730549	1.00[CHB][hapmap];0.94[CHD][hapmap];0.90[GIH][hapmap];0.83[JPT][hapmap];0.94[MEX][hapmap];0.89[TSI][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28738919	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28766386	1.00[CEU][hapmap];0.95[GIH][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs28827477	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35115595	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35451957	0.90[ASN][1000 genomes]
rs3742606	1.00[CEU][hapmap];0.95[GIH][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3742608	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3783722	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[ASN][1000 genomes]
rs3783723	0.92[ASN][1000 genomes]
rs3783724	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[ASN][1000 genomes]
rs3783727	0.83[EUR][1000 genomes]
rs4632045	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57525201	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs58893738	0.90[ASN][1000 genomes]
rs59213791	0.83[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs59440409	0.91[ASN][1000 genomes]
rs59512674	0.90[ASN][1000 genomes]
rs59577187	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs60908674	0.91[ASN][1000 genomes]
rs61615397	0.91[ASN][1000 genomes]
rs61985663	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61985668	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61985706	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61985707	0.92[ASN][1000 genomes]
rs61985711	0.90[ASN][1000 genomes]
rs6573559	1.00[CEU][hapmap];0.97[GIH][hapmap];0.87[MEX][hapmap];0.97[TSI][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7160131	0.82[CEU][hapmap];0.93[MEX][hapmap]
rs7160634	1.00[CHB][hapmap];0.94[CHD][hapmap];0.87[GIH][hapmap];0.83[JPT][hapmap];0.94[MEX][hapmap];0.89[TSI][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73265639	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73265640	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73265641	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73267743	0.92[ASN][1000 genomes]
rs73267744	0.92[ASN][1000 genomes]
rs745686	0.84[GIH][hapmap];0.89[TSI][hapmap];0.84[EUR][1000 genomes]
rs926803	1.00[CHB][hapmap];0.94[CHD][hapmap];0.84[GIH][hapmap];0.83[JPT][hapmap];0.94[MEX][hapmap];0.89[TSI][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9323450	1.00[CEU][hapmap];0.85[TSI][hapmap]
rs9323451	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9323452	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:10)

SNP	Gene	Cis/trans	Tissue	Source
rs10142879	ZBTB25	cis	lymphoblastoid	seeQTL
rs10142879	ZBTB25	cis	parietal	SCAN
rs10142879	ZBTB25	cis	cerebellum	SCAN
rs10142879	ZBTB25	cis	lung	GTEx
rs10142879	ZBTB1	cis	cerebellum	SCAN
rs10142879	ZBTB1	cis	lymphoblastoid	seeQTL
rs10142879	ZBTB25	cis	multi-tissue	Pritchard
rs10142879	ZBTB1	Cis_1M	lymphoblastoid	RTeQTL
rs10142879	ZBTB25	cis	Nerve Tibial	GTEx
rs10142879	ZBTB25	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64933200-64968400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr14:64933400-64968200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr14:64936800-64968400	Weak transcription	Fetal Brain Male	brain
4	chr14:64950000-64968200	Weak transcription	Colonic Mucosa	Colon
5	chr14:64950600-64967800	Weak transcription	HUVEC	blood vessel
6	chr14:64952200-64968000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr14:64953200-64968200	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr14:64954600-64966600	Weak transcription	HepG2	liver
9	chr14:64954600-64968000	Weak transcription	Rectal Smooth Muscle	rectum
10	chr14:64954600-64968200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr14:64954600-64968400	Weak transcription	Esophagus	oesophagus
12	chr14:64954600-64968400	Weak transcription	Gastric	stomach
13	chr14:64954600-64968400	Weak transcription	Pancreas	Pancrea
14	chr14:64954800-64966200	Weak transcription	Small Intestine	intestine
15	chr14:64954800-64966400	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr14:64954800-64966400	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr14:64954800-64968200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr14:64954800-64968200	Weak transcription	HSMMtube	muscle
19	chr14:64954800-64968400	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr14:64954800-64968400	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr14:64954800-64968400	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr14:64954800-64968400	Weak transcription	Spleen	Spleen
23	chr14:64954800-64969600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr14:64955000-64968000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr14:64955000-64968200	Weak transcription	Brain Substantia Nigra	brain
26	chr14:64955200-64967800	Weak transcription	NHDF-Ad	bronchial
27	chr14:64955200-64968000	Weak transcription	Brain Hippocampus Middle	brain
28	chr14:64955200-64968000	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr14:64955200-64968200	Weak transcription	Right Ventricle	heart
30	chr14:64955400-64966600	Weak transcription	Duodenum Mucosa	Duodenum
31	chr14:64955400-64967800	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr14:64955400-64967800	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr14:64955400-64968200	Weak transcription	Fetal Kidney	kidney
34	chr14:64955600-64968200	Weak transcription	Placenta	Placenta
35	chr14:64955600-64968200	Weak transcription	NHLF	lung
36	chr14:64955800-64968200	Weak transcription	Brain Cingulate Gyrus	brain
37	chr14:64955800-64968400	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr14:64956000-64967800	Weak transcription	Brain Germinal Matrix	brain
39	chr14:64956000-64968400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr14:64956200-64968000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr14:64956200-64968200	Weak transcription	Primary monocytes fromperipheralblood	blood
42	chr14:64956200-64968200	Weak transcription	Fetal Brain Female	brain
43	chr14:64956200-64968600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr14:64956400-64968200	Weak transcription	HSMM	muscle
45	chr14:64956600-64968400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr14:64956800-64968800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr14:64957200-64967800	Weak transcription	Liver	Liver
48	chr14:64957400-64967200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr14:64957600-64968400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr14:64958000-64968200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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