Variant report

Variant	rs7160634
Chromosome Location	chr14:65001209-65001210
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr14:65000986-65001215	MCF10A-Er-Src	breast:	n/a	n/a
2	POLR2A	chr14:65001195-65001250	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr14:64995191..64998249-chr14:64998660..65002269,3	K562	blood:
2	chr14:64971457..64973242-chr14:64998934..65001552,2	K562	blood:
3	chr14:64967941..64976890-chr14:65001097..65012463,31	MCF-7	breast:

Variant related genes	Relation type
HSPA2	TF binding region
ENSG00000089775	Chromatin interaction
ENSG00000126804	Chromatin interaction

Extended variants
information (count: 99 )
Associated
traits (count: 10 )

rSNPs within LD-proxies of this variant (count:99)

rs_ID	r²[population]
rs10131155	0.87[ASN][1000 genomes]
rs10131416	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10132424	0.93[CHB][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs10132969	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10133243	0.83[CHB][hapmap];0.83[JPT][hapmap];0.82[ASN][1000 genomes]
rs10133411	0.93[CHB][hapmap];0.83[CHD][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs10133696	1.00[CHB][hapmap];0.94[CHD][hapmap];0.90[GIH][hapmap];0.83[JPT][hapmap];0.93[MEX][hapmap];0.87[TSI][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10133848	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10134530	0.90[GIH][hapmap];0.87[MEX][hapmap];0.89[TSI][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10136732	0.90[GIH][hapmap];0.87[MEX][hapmap];0.89[TSI][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10138256	0.85[ASN][1000 genomes]
rs10142835	0.90[CHB][hapmap];0.85[ASN][1000 genomes]
rs10142879	1.00[CHB][hapmap];0.94[CHD][hapmap];0.87[GIH][hapmap];0.83[JPT][hapmap];0.94[MEX][hapmap];0.89[TSI][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10143170	0.85[ASN][1000 genomes]
rs10143839	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10145001	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10145005	0.85[EUR][1000 genomes]
rs10145013	0.90[GIH][hapmap];0.87[MEX][hapmap];0.89[TSI][hapmap];0.85[EUR][1000 genomes]
rs10147522	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10149286	0.85[ASN][1000 genomes]
rs10150781	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10151970	0.80[EUR][1000 genomes]
rs10873173	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11158542	0.87[GIH][hapmap];0.89[TSI][hapmap]
rs11158543	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11158544	0.85[ASN][1000 genomes]
rs11623457	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11625265	1.00[CHB][hapmap];0.94[CHD][hapmap];0.90[GIH][hapmap];0.83[JPT][hapmap];0.87[MEX][hapmap];0.86[TSI][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11626222	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11627387	0.90[GIH][hapmap];0.87[TSI][hapmap];0.82[EUR][1000 genomes]
rs11628221	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11845653	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11847054	0.85[ASN][1000 genomes]
rs11848179	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11849935	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11851236	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12050238	1.00[CHB][hapmap];0.83[JPT][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12050358	1.00[CHB][hapmap];0.94[CHD][hapmap];0.90[GIH][hapmap];0.83[JPT][hapmap];0.94[MEX][hapmap];0.89[TSI][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12385910	0.93[CHB][hapmap];0.83[JPT][hapmap];0.86[ASN][1000 genomes]
rs12385918	0.93[CHB][hapmap];0.83[CHD][hapmap];0.80[GIH][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs12586212	0.83[ASN][1000 genomes]
rs12588886	0.84[CHB][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs12589947	0.82[ASN][1000 genomes]
rs1453004	0.93[CHB][hapmap];0.83[CHD][hapmap];0.80[GIH][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs1453007	0.93[CHB][hapmap];0.83[JPT][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1453009	0.93[CHB][hapmap];0.83[CHD][hapmap];0.80[GIH][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs1470851	1.00[CHB][hapmap];0.94[CHD][hapmap];0.90[GIH][hapmap];0.83[JPT][hapmap];0.94[MEX][hapmap];0.89[TSI][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17101896	0.85[ASN][1000 genomes]
rs1966865	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1980519	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1980520	1.00[CHB][hapmap];0.94[CHD][hapmap];0.90[GIH][hapmap];0.83[JPT][hapmap];0.94[MEX][hapmap];0.89[TSI][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1982440	0.93[CHB][hapmap];0.83[CHD][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs2045024	0.87[GIH][hapmap];0.87[MEX][hapmap];0.89[TSI][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2123459	0.89[GIH][hapmap];0.89[TSI][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2123460	0.90[GIH][hapmap];0.87[MEX][hapmap];0.89[TSI][hapmap];0.84[EUR][1000 genomes]
rs2198347	1.00[CHB][hapmap];0.94[CHD][hapmap];0.90[GIH][hapmap];0.83[JPT][hapmap];0.94[MEX][hapmap];0.89[TSI][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28446048	0.83[ASN][1000 genomes]
rs28469649	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28626711	0.85[ASN][1000 genomes]
rs28666045	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28730549	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28738919	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28766386	0.87[GIH][hapmap];0.87[MEX][hapmap];0.89[TSI][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35115595	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35451957	0.85[ASN][1000 genomes]
rs3742606	0.87[GIH][hapmap];0.87[MEX][hapmap];0.89[TSI][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3742608	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3783722	0.93[CHB][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs3783723	0.83[ASN][1000 genomes]
rs3783724	0.93[CHB][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs3783725	0.82[EUR][1000 genomes]
rs3783727	0.87[EUR][1000 genomes]
rs4632045	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57525201	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs58893738	0.85[ASN][1000 genomes]
rs59440409	0.82[ASN][1000 genomes]
rs59512674	0.85[ASN][1000 genomes]
rs59577187	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs60908674	0.82[ASN][1000 genomes]
rs61615397	0.82[ASN][1000 genomes]
rs61985663	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61985668	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61985706	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61985707	0.83[ASN][1000 genomes]
rs61985711	0.85[ASN][1000 genomes]
rs6573559	0.90[GIH][hapmap];0.81[MEX][hapmap];0.87[TSI][hapmap];0.82[EUR][1000 genomes]
rs7160131	0.86[MEX][hapmap]
rs73265639	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73265640	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73265641	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73267743	0.83[ASN][1000 genomes]
rs73267744	0.83[ASN][1000 genomes]
rs745686	1.00[CEU][hapmap];0.92[GIH][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes]
rs8016556	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs8022537	0.82[EUR][1000 genomes]
rs8022545	0.82[EUR][1000 genomes]
rs926803	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9323451	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9323452	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]

mRNA abundance (count:10)

SNP	Gene	Cis/trans	Tissue	Source
rs7160634	ZBTB25	cis	multi-tissue	Pritchard
rs7160634	SPTB	cis	cerebellum	SCAN
rs7160634	ZBTB25	cis	parietal	SCAN
rs7160634	ZBTB25	Cis_1M	lymphoblastoid	RTeQTL
rs7160634	ZBTB25	cis	lymphoblastoid	seeQTL
rs7160634	ZBTB1	cis	lymphoblastoid	seeQTL
rs7160634	ZBTB25	cis	cerebellum	SCAN
rs7160634	ZBTB1	cis	cerebellum	SCAN
rs7160634	SYT16	cis	parietal	SCAN
rs7160634	MTHFD1	cis	cerebellum	SCAN

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64974800-65006000	Weak transcription	Ovary	ovary
2	chr14:64976000-65006000	Weak transcription	Brain Germinal Matrix	brain
3	chr14:64978200-65006000	Weak transcription	Brain Cingulate Gyrus	brain
4	chr14:64979200-65005800	Weak transcription	Brain Anterior Caudate	brain
5	chr14:64982000-65005800	Weak transcription	Fetal Heart	heart
6	chr14:64987800-65005000	Weak transcription	Pancreas	Pancrea
7	chr14:64989200-65006000	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr14:64989800-65005800	Weak transcription	Right Ventricle	heart
9	chr14:64990200-65002400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr14:64990200-65003400	Weak transcription	HSMMtube	muscle
11	chr14:64990200-65003400	Weak transcription	NHLF	lung
12	chr14:64990200-65005800	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr14:64990200-65005800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr14:64990200-65005800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr14:64990200-65006000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr14:64990200-65006000	Weak transcription	Aorta	Aorta
17	chr14:64990200-65006000	Weak transcription	Fetal Muscle Leg	muscle
18	chr14:64990200-65006000	Weak transcription	Left Ventricle	heart
19	chr14:64990200-65006200	Weak transcription	Small Intestine	intestine
20	chr14:64990400-65003600	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr14:64990400-65005800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr14:64990400-65005800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr14:64990400-65005800	Weak transcription	Adipose Nuclei	Adipose
24	chr14:64990400-65005800	Weak transcription	Fetal Kidney	kidney
25	chr14:64990400-65005800	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr14:64990400-65005800	Weak transcription	Stomach Smooth Muscle	stomach
27	chr14:64990400-65006000	Weak transcription	Fetal Intestine Large	intestine
28	chr14:64990600-65005800	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr14:64990800-65005800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr14:64991000-65005600	Weak transcription	Primary T cells fromperipheralblood	blood
31	chr14:64991000-65005600	Weak transcription	Primary T helper cells PMA-I stimulated	--
32	chr14:64991400-65003200	Weak transcription	NHDF-Ad	bronchial
33	chr14:64992000-65005800	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr14:64992200-65005800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr14:64992400-65003400	Weak transcription	A549	lung
36	chr14:64992400-65003600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr14:64993200-65003400	Weak transcription	Hela-S3	cervix
38	chr14:64993400-65005800	Weak transcription	NH-A	brain
39	chr14:64993400-65005800	Weak transcription	NHEK	skin
40	chr14:64993600-65006000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
41	chr14:64993800-65003000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr14:64993800-65003200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr14:64993800-65003200	Weak transcription	Placenta	Placenta
44	chr14:64993800-65005400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
45	chr14:64993800-65005600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr14:64993800-65005800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr14:64993800-65005800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr14:64993800-65005800	Weak transcription	Fetal Intestine Small	intestine
49	chr14:64993800-65005800	Weak transcription	GM12878-XiMat	blood
50	chr14:64993800-65006000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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