Variant report

Variant	rs10151970
Chromosome Location	chr14:65022783-65022784
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10132033	0.82[ASN][1000 genomes]
rs10136052	0.81[EUR][1000 genomes]
rs10142343	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10142536	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10151434	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2123458	0.83[ASN][1000 genomes]
rs56690759	0.80[ASN][1000 genomes]
rs61987034	0.87[ASN][1000 genomes]
rs61987038	0.84[ASN][1000 genomes]
rs7149587	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7160131	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7160634	0.80[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10151970	ZBTB25	Cis_1M	lymphoblastoid	RTeQTL
rs10151970	ZBTB25	cis	multi-tissue	Pritchard

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65017400-65027800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr14:65021400-65033400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr14:65021600-65023000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr14:65021600-65023200	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr14:65021600-65047600	Weak transcription	Pancreas	Pancrea

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links