Variant report

Variant	rs56690759
Chromosome Location	chr14:65051985-65051986
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65006752..65008464-chr14:65051582..65054161,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000259116	Chromatin interaction
ENSG00000126803	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10130241	0.81[ASN][1000 genomes]
rs10130755	0.87[ASN][1000 genomes]
rs10132794	0.81[ASN][1000 genomes]
rs10133861	0.82[ASN][1000 genomes]
rs10134770	0.83[ASN][1000 genomes]
rs10136052	0.82[EUR][1000 genomes]
rs10138611	0.82[ASN][1000 genomes]
rs10140678	0.80[ASN][1000 genomes]
rs10142343	0.80[ASN][1000 genomes]
rs10142536	0.87[EUR][1000 genomes]
rs10145003	0.82[ASN][1000 genomes]
rs10145101	0.82[ASN][1000 genomes]
rs10145275	0.85[ASN][1000 genomes]
rs10145844	0.85[ASN][1000 genomes]
rs10151434	0.80[ASN][1000 genomes]
rs10151656	0.84[ASN][1000 genomes]
rs10151970	0.80[ASN][1000 genomes]
rs10467818	0.83[ASN][1000 genomes]
rs11158548	0.85[ASN][1000 genomes]
rs11844669	0.82[ASN][1000 genomes]
rs11846008	0.82[ASN][1000 genomes]
rs11848587	0.82[ASN][1000 genomes]
rs11850291	0.83[ASN][1000 genomes]
rs12586275	0.82[ASN][1000 genomes]
rs12588437	0.83[ASN][1000 genomes]
rs12588509	0.83[ASN][1000 genomes]
rs17101956	0.80[ASN][1000 genomes]
rs1955661	0.82[ASN][1000 genomes]
rs1955663	0.82[ASN][1000 genomes]
rs2123458	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28714198	0.82[ASN][1000 genomes]
rs2884269	0.82[ASN][1000 genomes]
rs56039018	0.82[ASN][1000 genomes]
rs56396472	0.83[ASN][1000 genomes]
rs61987036	0.83[ASN][1000 genomes]
rs61987038	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7140482	0.80[ASN][1000 genomes]
rs7148864	0.80[ASN][1000 genomes]
rs7149587	0.80[ASN][1000 genomes]
rs7160131	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs74056339	0.80[ASN][1000 genomes]
rs74056358	0.80[ASN][1000 genomes]
rs8006017	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049097	chr14:65027753-65202018	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs56690759	ZBTB25	cis	multi-tissue	Pritchard
rs56690759	ZBTB25	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65040200-65058000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:65047800-65059000	Weak transcription	Gastric	stomach
3	chr14:65048800-65068400	Weak transcription	Pancreas	Pancrea
4	chr14:65049000-65052000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr14:65051600-65052000	Enhancers	Psoas Muscle	Psoas

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