Variant report

Variant	rs12588437
Chromosome Location	chr14:65047084-65047085
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65046215..65048699-chr14:65056837..65059085,2	K562	blood:
2	chr14:65017028..65018763-chr14:65046297..65047824,2	MCF-7	breast:

Extended variants
information (count: 50 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10130241	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10130755	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10132033	0.88[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs10132794	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10133861	0.94[ASN][1000 genomes]
rs10134770	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10138611	0.87[ASN][1000 genomes]
rs10140678	0.92[ASN][1000 genomes]
rs10144661	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10145003	0.87[ASN][1000 genomes]
rs10145101	0.87[ASN][1000 genomes]
rs10145275	0.85[ASN][1000 genomes]
rs10145844	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10150987	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10151656	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10467818	0.89[ASN][1000 genomes]
rs10498516	0.91[ASN][1000 genomes]
rs11158547	0.88[ASN][1000 genomes]
rs11158548	0.85[ASN][1000 genomes]
rs11158549	0.84[ASN][1000 genomes]
rs11844669	0.87[ASN][1000 genomes]
rs11846008	0.87[ASN][1000 genomes]
rs11848587	0.87[ASN][1000 genomes]
rs11850291	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12586275	0.87[ASN][1000 genomes]
rs12588509	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17101956	0.92[ASN][1000 genomes]
rs1955661	0.87[ASN][1000 genomes]
rs1955662	0.83[ASN][1000 genomes]
rs1955663	0.87[ASN][1000 genomes]
rs2123458	0.86[ASN][1000 genomes]
rs28714198	0.87[ASN][1000 genomes]
rs28761289	0.88[ASN][1000 genomes]
rs2884269	0.94[ASN][1000 genomes]
rs56039018	0.94[ASN][1000 genomes]
rs56396472	0.88[ASN][1000 genomes]
rs56690759	0.83[ASN][1000 genomes]
rs61987034	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61987035	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61987036	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987038	0.87[ASN][1000 genomes]
rs7140482	0.85[ASN][1000 genomes]
rs7148864	0.85[ASN][1000 genomes]
rs7153518	0.84[ASN][1000 genomes]
rs7156649	0.84[ASN][1000 genomes]
rs74056339	0.92[ASN][1000 genomes]
rs74056358	0.85[ASN][1000 genomes]
rs74056359	0.88[ASN][1000 genomes]
rs8006017	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049097	chr14:65027753-65202018	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12588437	ZBTB25	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65021600-65047600	Weak transcription	Pancreas	Pancrea
2	chr14:65040200-65047200	Weak transcription	Psoas Muscle	Psoas
3	chr14:65040200-65047400	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr14:65040200-65047800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr14:65040200-65048000	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr14:65040200-65051200	Weak transcription	Stomach Smooth Muscle	stomach
7	chr14:65040200-65058000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr14:65040400-65047200	Weak transcription	Rectal Smooth Muscle	rectum
9	chr14:65040400-65048000	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr14:65041800-65047200	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr14:65041800-65047400	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr14:65041800-65048000	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr14:65044400-65047200	Weak transcription	Fetal Kidney	kidney
14	chr14:65045800-65047200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr14:65046000-65047400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr14:65046800-65048000	Enhancers	Colon Smooth Muscle	Colon
17	chr14:65046800-65049000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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