Variant report

Variant	rs11846008
Chromosome Location	chr14:65112663-65112664
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10130241	0.85[ASN][1000 genomes]
rs10130755	0.91[ASN][1000 genomes]
rs10132794	1.00[CHB][hapmap];0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs10133861	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10134770	1.00[CHB][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs10138611	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10140678	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10144661	1.00[CHB][hapmap];0.87[JPT][hapmap];0.81[ASN][1000 genomes]
rs10145003	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10145101	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10145275	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10145844	0.90[ASN][1000 genomes]
rs10150987	0.83[ASN][1000 genomes]
rs10151656	1.00[CHB][hapmap];0.87[JPT][hapmap];0.91[ASN][1000 genomes]
rs10467818	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10498516	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11158547	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11158548	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11158549	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11158550	0.90[AFR][1000 genomes]
rs11158551	0.90[AFR][1000 genomes]
rs11844669	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11846264	0.93[CHB][hapmap]
rs11848587	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11850291	1.00[CHB][hapmap];0.87[JPT][hapmap];0.87[ASN][1000 genomes]
rs12586275	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12588437	0.87[ASN][1000 genomes]
rs12588509	1.00[CHB][hapmap];0.87[JPT][hapmap];0.87[ASN][1000 genomes]
rs17101956	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1955661	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1955662	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1955663	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2123458	0.85[ASN][1000 genomes]
rs28714198	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28761289	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2884269	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56039018	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56396472	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56690759	0.82[ASN][1000 genomes]
rs58268586	0.90[AFR][1000 genomes]
rs58273663	0.90[AFR][1000 genomes]
rs61067746	0.90[AFR][1000 genomes]
rs61987035	0.83[ASN][1000 genomes]
rs61987036	0.87[ASN][1000 genomes]
rs61987038	0.86[ASN][1000 genomes]
rs7140482	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7148864	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7153518	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7156649	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7160131	0.94[CHB][hapmap]
rs74056339	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs74056358	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs74056359	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8006017	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049097	chr14:65027753-65202018	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65106800-65115400	Weak transcription	Fetal Intestine Small	intestine
2	chr14:65110600-65116200	Enhancers	Placenta	Placenta
3	chr14:65111000-65113200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr14:65111000-65113400	Enhancers	H1 Cell Line	embryonic stem cell
5	chr14:65111200-65113200	Enhancers	Placenta Amnion	Placenta Amnion
6	chr14:65111200-65113200	Enhancers	HSMMtube	muscle
7	chr14:65111200-65113400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr14:65111400-65113200	Enhancers	Muscle Satellite Cultured Cells	--
9	chr14:65111400-65113200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr14:65111400-65113200	Enhancers	Fetal Stomach	stomach
11	chr14:65111400-65113200	Enhancers	Ovary	ovary
12	chr14:65111400-65113200	Enhancers	Rectal Smooth Muscle	rectum
13	chr14:65111400-65113200	Enhancers	NH-A	brain
14	chr14:65111400-65113400	Enhancers	Fetal Muscle Leg	muscle
15	chr14:65111600-65112800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr14:65111600-65112800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr14:65111600-65113000	Enhancers	Duodenum Smooth Muscle	Duodenum
18	chr14:65111600-65113200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr14:65111600-65113200	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr14:65111600-65113200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr14:65111600-65113200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr14:65111600-65113200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr14:65111600-65113400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr14:65111600-65113400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr14:65111600-65113400	Enhancers	HSMM	muscle
26	chr14:65111600-65113400	Enhancers	NHDF-Ad	bronchial
27	chr14:65111600-65113400	Enhancers	NHLF	lung
28	chr14:65111800-65112800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr14:65111800-65112800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
30	chr14:65111800-65112800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr14:65111800-65112800	Enhancers	Breast Myoepithelial Primary Cells	Breast
32	chr14:65111800-65112800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr14:65111800-65113000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr14:65111800-65113000	Enhancers	Adipose Nuclei	Adipose
35	chr14:65111800-65113000	Enhancers	Fetal Heart	heart
36	chr14:65112000-65112800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr14:65112000-65113000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr14:65112000-65113000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr14:65112000-65113000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
40	chr14:65112000-65113000	Enhancers	Fetal Kidney	kidney
41	chr14:65112000-65113000	Flanking Active TSS	A549	lung
42	chr14:65112000-65113200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr14:65112000-65113200	Enhancers	Cortex derived primary cultured neurospheres	brain
44	chr14:65112000-65113400	Enhancers	HepG2	liver
45	chr14:65112200-65112800	Enhancers	Fetal Lung	lung
46	chr14:65112200-65112800	Flanking Active TSS	Stomach Smooth Muscle	stomach
47	chr14:65112200-65113000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr14:65112200-65113000	Weak transcription	Fetal Intestine Large	intestine
49	chr14:65112200-65113200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr14:65112400-65112800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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