Variant report

Variant	rs61987038
Chromosome Location	chr14:65054252-65054253
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10130241	0.85[ASN][1000 genomes]
rs10130755	0.90[ASN][1000 genomes]
rs10132794	0.85[ASN][1000 genomes]
rs10133861	0.86[ASN][1000 genomes]
rs10134770	0.87[ASN][1000 genomes]
rs10136052	0.82[EUR][1000 genomes]
rs10138611	0.86[ASN][1000 genomes]
rs10140678	0.83[ASN][1000 genomes]
rs10142343	0.84[ASN][1000 genomes]
rs10142536	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10144661	0.80[ASN][1000 genomes]
rs10145003	0.86[ASN][1000 genomes]
rs10145101	0.86[ASN][1000 genomes]
rs10145275	0.88[ASN][1000 genomes]
rs10145844	0.89[ASN][1000 genomes]
rs10150987	0.82[ASN][1000 genomes]
rs10151434	0.84[ASN][1000 genomes]
rs10151656	0.88[ASN][1000 genomes]
rs10151970	0.84[ASN][1000 genomes]
rs10467818	0.87[ASN][1000 genomes]
rs10498516	0.82[ASN][1000 genomes]
rs11158547	0.80[ASN][1000 genomes]
rs11158548	0.88[ASN][1000 genomes]
rs11158549	0.82[ASN][1000 genomes]
rs11844669	0.86[ASN][1000 genomes]
rs11846008	0.86[ASN][1000 genomes]
rs11848587	0.86[ASN][1000 genomes]
rs11850291	0.87[ASN][1000 genomes]
rs12586275	0.86[ASN][1000 genomes]
rs12588437	0.87[ASN][1000 genomes]
rs12588509	0.87[ASN][1000 genomes]
rs17101956	0.83[ASN][1000 genomes]
rs1955661	0.86[ASN][1000 genomes]
rs1955662	0.82[ASN][1000 genomes]
rs1955663	0.86[ASN][1000 genomes]
rs2123458	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28714198	0.86[ASN][1000 genomes]
rs28761289	0.80[ASN][1000 genomes]
rs2884269	0.86[ASN][1000 genomes]
rs56039018	0.86[ASN][1000 genomes]
rs56396472	0.87[ASN][1000 genomes]
rs56690759	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61987035	0.82[ASN][1000 genomes]
rs61987036	0.87[ASN][1000 genomes]
rs7140482	0.84[ASN][1000 genomes]
rs7148864	0.84[ASN][1000 genomes]
rs7149587	0.84[ASN][1000 genomes]
rs7153518	0.82[ASN][1000 genomes]
rs7156649	0.82[ASN][1000 genomes]
rs7160131	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs74056339	0.83[ASN][1000 genomes]
rs74056358	0.84[ASN][1000 genomes]
rs74056359	0.80[ASN][1000 genomes]
rs8006017	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049097	chr14:65027753-65202018	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs61987038	ZBTB25	Cis_1M	lymphoblastoid	RTeQTL
rs61987038	ZBTB25	cis	multi-tissue	Pritchard

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65040200-65058000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:65047800-65059000	Weak transcription	Gastric	stomach
3	chr14:65048800-65068400	Weak transcription	Pancreas	Pancrea
4	chr14:65053200-65057000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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