Variant report

Variant	rs11158549
Chromosome Location	chr14:65116550-65116551
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65116281..65118430-chr14:65188317..65189997,2	MCF-7	breast:
2	chr14:65005047..65007103-chr14:65114949..65116986,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000259116	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10130241	0.82[ASN][1000 genomes]
rs10130755	0.87[ASN][1000 genomes]
rs10132794	1.00[CHB][hapmap];0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs10133861	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10134770	1.00[CHB][hapmap];0.91[CHD][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs10138611	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10140678	0.90[ASN][1000 genomes]
rs10144661	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs10145003	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10145101	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10145275	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10145844	0.86[ASN][1000 genomes]
rs10151656	1.00[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.87[ASN][1000 genomes]
rs10467818	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10498516	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11158547	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11158548	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.88[MEX][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11158550	0.95[AFR][1000 genomes]
rs11158551	0.95[AFR][1000 genomes]
rs11844669	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.88[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11846008	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11846264	0.88[CHB][hapmap];0.88[GIH][hapmap];0.88[MEX][hapmap]
rs11848587	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.88[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11850291	1.00[CHB][hapmap];0.87[CHD][hapmap];0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs12586275	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12588437	0.84[ASN][1000 genomes]
rs12588509	1.00[CHB][hapmap];0.87[CHD][hapmap];0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs17101956	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1955661	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1955662	1.00[ASW][hapmap];0.94[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];1.00[LWK][hapmap];0.88[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1955663	1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2123458	0.81[ASN][1000 genomes]
rs28714198	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs28761289	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2884269	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs56039018	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs56396472	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs58268586	0.95[AFR][1000 genomes]
rs58273663	0.95[AFR][1000 genomes]
rs61067746	0.95[AFR][1000 genomes]
rs61987036	0.84[ASN][1000 genomes]
rs61987038	0.82[ASN][1000 genomes]
rs7140482	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7148864	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7153518	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7156649	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.91[ASN][1000 genomes]
rs7160131	0.94[CHB][hapmap]
rs74056339	0.87[ASN][1000 genomes]
rs74056358	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs74056359	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs8006017	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049097	chr14:65027753-65202018	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11158549	ZBTB25	cis	cerebellum	SCAN

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65113000-65121000	Weak transcription	Fetal Heart	heart
2	chr14:65115200-65116800	Enhancers	H1 Cell Line	embryonic stem cell
3	chr14:65115200-65116800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr14:65115200-65116800	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr14:65115200-65116800	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr14:65115200-65117000	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr14:65115400-65116800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr14:65115400-65116800	Enhancers	Fetal Muscle Leg	muscle
9	chr14:65115600-65116600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr14:65115600-65116600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr14:65115600-65116600	Enhancers	Adipose Nuclei	Adipose
12	chr14:65115600-65116600	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr14:65115600-65116600	Enhancers	Osteobl	bone
14	chr14:65115800-65117000	Enhancers	Liver	Liver
15	chr14:65115800-65117800	Enhancers	A549	lung
16	chr14:65115800-65120600	Weak transcription	NH-A	brain
17	chr14:65116000-65117000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
18	chr14:65116200-65116600	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr14:65116200-65116600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr14:65116200-65116600	Enhancers	Primary neutrophils fromperipheralblood	blood
21	chr14:65116200-65116600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr14:65116200-65116600	Enhancers	Placenta Amnion	Placenta Amnion
23	chr14:65116200-65116600	Enhancers	NHDF-Ad	bronchial
24	chr14:65116200-65116600	Enhancers	NHLF	lung
25	chr14:65116200-65116800	Enhancers	H9 Cell Line	embryonic stem cell
26	chr14:65116200-65116800	Enhancers	iPS-20b Cell Line	embryonic stem cell
27	chr14:65116200-65116800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr14:65116200-65116800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr14:65116200-65116800	Bivalent Enhancer	Placenta	Placenta
30	chr14:65116200-65116800	Enhancers	Spleen	Spleen
31	chr14:65116200-65117000	Enhancers	HUES48 Cell Line	embryonic stem cell
32	chr14:65116200-65117000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr14:65116200-65117800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr14:65116400-65116600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr14:65116400-65116600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr14:65116400-65116600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr14:65116400-65116800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr14:65116400-65117000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr14:65116400-65117000	Bivalent Enhancer	HepG2	liver
40	chr14:65116400-65120600	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr14:65116400-65121000	Weak transcription	Pancreas	Pancrea

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