Variant report

Variant	rs2123458
Chromosome Location	chr14:65059157-65059158
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 9 )

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10130241	0.84[ASN][1000 genomes]
rs10130755	0.89[ASN][1000 genomes]
rs10132794	0.93[CHB][hapmap];0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs10133696	0.80[CEU][hapmap]
rs10133861	0.85[ASN][1000 genomes]
rs10134770	0.94[CHB][hapmap];0.85[CHD][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs10136052	0.82[EUR][1000 genomes]
rs10138611	0.85[ASN][1000 genomes]
rs10140678	0.82[ASN][1000 genomes]
rs10142343	0.83[ASN][1000 genomes]
rs10142536	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10144661	0.94[CHB][hapmap];0.94[JPT][hapmap]
rs10145003	0.85[ASN][1000 genomes]
rs10145101	0.94[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs10145275	0.94[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs10145844	0.88[ASN][1000 genomes]
rs10150987	0.81[ASN][1000 genomes]
rs10151434	0.83[ASN][1000 genomes]
rs10151656	0.94[CHB][hapmap];0.85[CHD][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs10151970	0.83[ASN][1000 genomes]
rs10467818	0.86[ASN][1000 genomes]
rs10498516	0.81[ASN][1000 genomes]
rs11158548	0.94[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs11158549	0.94[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs11844669	0.94[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs11846008	0.85[ASN][1000 genomes]
rs11846264	0.82[CHB][hapmap]
rs11848587	0.94[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs11850291	0.94[CHB][hapmap];0.88[CHD][hapmap];0.86[GIH][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs12586275	0.85[ASN][1000 genomes]
rs12588437	0.86[ASN][1000 genomes]
rs12588509	0.94[CHB][hapmap];0.88[CHD][hapmap];0.86[GIH][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs17101956	0.82[ASN][1000 genomes]
rs1955661	0.94[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs1955662	0.88[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs1955663	0.94[CHB][hapmap];0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs28714198	0.85[ASN][1000 genomes]
rs2884269	0.85[ASN][1000 genomes]
rs56039018	0.85[ASN][1000 genomes]
rs56396472	0.86[ASN][1000 genomes]
rs56690759	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61987035	0.81[ASN][1000 genomes]
rs61987036	0.86[ASN][1000 genomes]
rs61987038	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7140482	0.83[ASN][1000 genomes]
rs7148864	0.94[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs7149587	0.83[ASN][1000 genomes]
rs7153518	0.81[ASN][1000 genomes]
rs7156649	0.94[CHB][hapmap];0.81[ASN][1000 genomes]
rs7160131	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.94[TSI][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs74056339	0.83[ASN][1000 genomes]
rs74056358	0.83[ASN][1000 genomes]
rs8006017	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049097	chr14:65027753-65202018	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

mRNA abundance (count:9)

SNP	Gene	Cis/trans	Tissue	Source
rs2123458	ZBTB25	cis	multi-tissue	Pritchard
rs2123458	ZBTB25	Cis_1M	lymphoblastoid	RTeQTL
rs2123458	WDR89	cis	cerebellum	SCAN
rs2123458	PLEKHH1	cis	cerebellum	SCAN
rs2123458	ZBTB25	cis	lymphoblastoid	seeQTL
rs2123458	ARG2	cis	parietal	SCAN
rs2123458	ZBTB1	cis	cerebellum	SCAN
rs2123458	PLEK2	cis	cerebellum	SCAN
rs2123458	ZBTB25	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65048800-65068400	Weak transcription	Pancreas	Pancrea
2	chr14:65058800-65062800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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