Variant report

Variant	rs61987035
Chromosome Location	chr14:65037867-65037868
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10130241	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10130755	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10132033	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10132794	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10133411	0.81[EUR][1000 genomes]
rs10133861	0.89[ASN][1000 genomes]
rs10134770	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10138256	0.81[EUR][1000 genomes]
rs10138611	0.83[ASN][1000 genomes]
rs10140678	0.87[ASN][1000 genomes]
rs10142536	0.81[ASN][1000 genomes]
rs10142835	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs10143170	0.81[EUR][1000 genomes]
rs10144661	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10145003	0.83[ASN][1000 genomes]
rs10145101	0.83[ASN][1000 genomes]
rs10145275	0.81[ASN][1000 genomes]
rs10145844	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10149286	0.81[EUR][1000 genomes]
rs10150987	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10151656	0.92[ASN][1000 genomes]
rs10467818	0.84[ASN][1000 genomes]
rs10498516	0.86[ASN][1000 genomes]
rs11158544	0.81[EUR][1000 genomes]
rs11158547	0.84[ASN][1000 genomes]
rs11158548	0.81[ASN][1000 genomes]
rs11844669	0.83[ASN][1000 genomes]
rs11846008	0.83[ASN][1000 genomes]
rs11847054	0.81[EUR][1000 genomes]
rs11848587	0.83[ASN][1000 genomes]
rs11850291	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12385918	0.81[EUR][1000 genomes]
rs12586275	0.83[ASN][1000 genomes]
rs12588437	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12588509	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1453009	0.81[EUR][1000 genomes]
rs17101896	0.81[EUR][1000 genomes]
rs17101956	0.87[ASN][1000 genomes]
rs1955661	0.83[ASN][1000 genomes]
rs1955663	0.83[ASN][1000 genomes]
rs2123458	0.81[ASN][1000 genomes]
rs28626711	0.81[EUR][1000 genomes]
rs28714198	0.83[ASN][1000 genomes]
rs28761289	0.84[ASN][1000 genomes]
rs2884269	0.89[ASN][1000 genomes]
rs35451957	0.81[EUR][1000 genomes]
rs3783722	0.81[EUR][1000 genomes]
rs56039018	0.89[ASN][1000 genomes]
rs56396472	0.84[ASN][1000 genomes]
rs58893738	0.81[EUR][1000 genomes]
rs59512674	0.81[EUR][1000 genomes]
rs61985711	0.81[EUR][1000 genomes]
rs61987034	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61987036	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61987038	0.82[ASN][1000 genomes]
rs7140482	0.81[ASN][1000 genomes]
rs7148864	0.81[ASN][1000 genomes]
rs7153518	0.82[ASN][1000 genomes]
rs7156649	0.82[ASN][1000 genomes]
rs7160131	0.81[ASN][1000 genomes]
rs74056339	0.87[ASN][1000 genomes]
rs74056358	0.81[ASN][1000 genomes]
rs74056359	0.84[ASN][1000 genomes]
rs8006017	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049097	chr14:65027753-65202018	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs61987035	ZBTB25	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65021600-65047600	Weak transcription	Pancreas	Pancrea
2	chr14:65028200-65039400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr14:65029400-65039400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr14:65030600-65039600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr14:65031000-65039000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr14:65033400-65040000	Weak transcription	Gastric	stomach
7	chr14:65033600-65039200	Weak transcription	Aorta	Aorta
8	chr14:65033600-65039400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr14:65033800-65039400	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr14:65033800-65039400	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr14:65033800-65039400	Weak transcription	Brain Angular Gyrus	brain
12	chr14:65033800-65040000	Weak transcription	Esophagus	oesophagus
13	chr14:65034000-65039000	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr14:65034400-65039200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr14:65034800-65039200	Weak transcription	Fetal Muscle Leg	muscle
16	chr14:65035800-65039400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr14:65036000-65041600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr14:65036200-65038600	Weak transcription	Rectal Smooth Muscle	rectum
19	chr14:65036200-65038800	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr14:65036200-65039400	Weak transcription	Adipose Nuclei	Adipose
21	chr14:65036200-65039400	Weak transcription	Brain Germinal Matrix	brain
22	chr14:65036200-65039600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr14:65036200-65039600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr14:65036200-65044000	Weak transcription	Fetal Kidney	kidney
25	chr14:65036400-65039000	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr14:65036400-65039000	Weak transcription	Brain Anterior Caudate	brain
27	chr14:65036400-65039000	Weak transcription	Brain Hippocampus Middle	brain
28	chr14:65036400-65039000	Weak transcription	Colon Smooth Muscle	Colon
29	chr14:65036400-65039200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr14:65036400-65039200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr14:65036400-65039400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr14:65036400-65039400	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr14:65036400-65039600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr14:65036600-65039000	Weak transcription	Fetal Lung	lung
35	chr14:65036600-65039400	Weak transcription	Fetal Muscle Trunk	muscle
36	chr14:65036800-65039000	Weak transcription	Brain Cingulate Gyrus	brain
37	chr14:65036800-65039200	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr14:65037000-65039200	Weak transcription	A549	lung
39	chr14:65037000-65039400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr14:65037000-65039400	Weak transcription	Psoas Muscle	Psoas
41	chr14:65037000-65039400	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr14:65037000-65039600	Weak transcription	HSMMtube	muscle
43	chr14:65037400-65039200	Weak transcription	Stomach Smooth Muscle	stomach
44	chr14:65037400-65039400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
45	chr14:65037600-65039000	Weak transcription	Brain Substantia Nigra	brain
46	chr14:65037600-65039200	Weak transcription	Hela-S3	cervix

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