Variant report

Variant	rs7153518
Chromosome Location	chr14:65104240-65104241
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:64969082..64972428-chr14:65101982..65105034,6	MCF-7	breast:
2	chr14:65102703..65104469-chr14:65109001..65111503,2	MCF-7	breast:
3	chr14:64968284..64972899-chr14:65099732..65106261,9	MCF-7	breast:
4	chr14:65098847..65101532-chr14:65103067..65106443,3	MCF-7	breast:
5	chr14:65005746..65011576-chr14:65100375..65105465,11	MCF-7	breast:
6	chr14:65101784..65105032-chr14:65169385..65172923,3	MCF-7	breast:
7	chr14:65005436..65008898-chr14:65101749..65105481,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000126822	Chromatin interaction
ENSG00000126803	Chromatin interaction
ENSG00000259116	Chromatin interaction
ENSG00000126804	Chromatin interaction
ENSG00000089775	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10130241	0.82[ASN][1000 genomes]
rs10130755	0.87[ASN][1000 genomes]
rs10132794	0.82[ASN][1000 genomes]
rs10133861	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10134770	0.88[ASN][1000 genomes]
rs10138611	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10140678	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10145003	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10145101	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10145275	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10145844	0.86[ASN][1000 genomes]
rs10150987	0.82[ASN][1000 genomes]
rs10151656	0.87[ASN][1000 genomes]
rs10467818	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10498516	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11158547	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11158548	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11158549	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11844669	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11846008	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11848587	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11849019	0.81[ASN][1000 genomes]
rs11850291	0.84[ASN][1000 genomes]
rs12586275	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12586702	0.81[ASN][1000 genomes]
rs12588437	0.84[ASN][1000 genomes]
rs12588509	0.84[ASN][1000 genomes]
rs17101956	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1955661	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1955662	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1955663	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2123458	0.81[ASN][1000 genomes]
rs28714198	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28761289	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2884269	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56039018	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56396472	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61987035	0.82[ASN][1000 genomes]
rs61987036	0.84[ASN][1000 genomes]
rs61987038	0.82[ASN][1000 genomes]
rs7140482	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7148864	0.92[ASN][1000 genomes]
rs7156649	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74056339	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs74056358	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs74056359	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8006017	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049097	chr14:65027753-65202018	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65096000-65105600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr14:65096000-65106200	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr14:65096800-65104400	Weak transcription	NHDF-Ad	bronchial
4	chr14:65099400-65111600	Weak transcription	Osteobl	bone
5	chr14:65099600-65104400	Weak transcription	Fetal Lung	lung
6	chr14:65101800-65104800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr14:65102400-65104600	Enhancers	A549	lung
8	chr14:65103000-65106800	Enhancers	Fetal Intestine Small	intestine
9	chr14:65103000-65109600	Enhancers	Placenta	Placenta
10	chr14:65103200-65105000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr14:65103200-65105000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr14:65103200-65105000	Enhancers	Adipose Nuclei	Adipose
13	chr14:65103200-65106600	Enhancers	NHEK	skin
14	chr14:65103200-65106800	Enhancers	NHLF	lung
15	chr14:65103400-65104400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr14:65103400-65104400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr14:65103400-65104400	Weak transcription	Fetal Intestine Large	intestine
18	chr14:65103400-65104400	Weak transcription	HSMM	muscle
19	chr14:65103400-65105200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr14:65103400-65105200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr14:65103400-65106200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr14:65103400-65106400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr14:65103400-65106400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr14:65103400-65106400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr14:65103400-65107000	Enhancers	Liver	Liver
26	chr14:65103400-65111000	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr14:65103600-65105200	Enhancers	HMEC	breast
28	chr14:65103600-65106600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr14:65103800-65104600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr14:65103800-65105000	Weak transcription	NH-A	brain
31	chr14:65103800-65106000	Weak transcription	GM12878-XiMat	blood
32	chr14:65103800-65106400	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr14:65103800-65111400	Weak transcription	Rectal Smooth Muscle	rectum
34	chr14:65103800-65111600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr14:65103800-65111800	Weak transcription	Fetal Heart	heart
36	chr14:65103800-65112400	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr14:65104000-65105400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr14:65104000-65106200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr14:65104000-65108800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr14:65104200-65104600	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr14:65104200-65108800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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