Variant report

Variant	rs74056359
Chromosome Location	chr14:65116231-65116232
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65005047..65007103-chr14:65114949..65116986,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000259116	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10130241	0.86[ASN][1000 genomes]
rs10130755	0.85[ASN][1000 genomes]
rs10132794	0.86[ASN][1000 genomes]
rs10133861	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10134770	0.93[ASN][1000 genomes]
rs10138611	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10140678	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10144661	0.82[ASN][1000 genomes]
rs10145003	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10145101	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10145275	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10145844	0.91[ASN][1000 genomes]
rs10150987	0.84[ASN][1000 genomes]
rs10151656	0.92[ASN][1000 genomes]
rs10467818	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10498516	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11158547	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11158548	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11158549	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11158550	0.93[AFR][1000 genomes]
rs11158551	0.93[AFR][1000 genomes]
rs11844669	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11846008	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11848587	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11850291	0.88[ASN][1000 genomes]
rs12586275	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12588437	0.88[ASN][1000 genomes]
rs12588509	0.88[ASN][1000 genomes]
rs17101956	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1955661	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1955662	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1955663	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28714198	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28761289	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2884269	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56039018	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56396472	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58268586	0.93[AFR][1000 genomes]
rs58273663	0.93[AFR][1000 genomes]
rs61067746	0.93[AFR][1000 genomes]
rs61987035	0.84[ASN][1000 genomes]
rs61987036	0.88[ASN][1000 genomes]
rs61987038	0.80[ASN][1000 genomes]
rs7140482	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7148864	0.94[ASN][1000 genomes]
rs7153518	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7156649	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs74056339	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs74056358	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8006017	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049097	chr14:65027753-65202018	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65112800-65116400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr14:65113000-65121000	Weak transcription	Fetal Heart	heart
3	chr14:65113200-65116400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr14:65113200-65116400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr14:65113200-65116400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr14:65115200-65116800	Enhancers	H1 Cell Line	embryonic stem cell
7	chr14:65115200-65116800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr14:65115200-65116800	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr14:65115200-65116800	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr14:65115200-65117000	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr14:65115400-65116800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr14:65115400-65116800	Enhancers	Fetal Muscle Leg	muscle
13	chr14:65115600-65116600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr14:65115600-65116600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr14:65115600-65116600	Enhancers	Adipose Nuclei	Adipose
16	chr14:65115600-65116600	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr14:65115600-65116600	Enhancers	Osteobl	bone
18	chr14:65115800-65117000	Enhancers	Liver	Liver
19	chr14:65115800-65117800	Enhancers	A549	lung
20	chr14:65115800-65120600	Weak transcription	NH-A	brain
21	chr14:65116000-65116400	Enhancers	Fetal Intestine Small	intestine
22	chr14:65116000-65117000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
23	chr14:65116200-65116400	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr14:65116200-65116400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr14:65116200-65116400	Enhancers	Fetal Lung	lung
26	chr14:65116200-65116400	Enhancers	Pancreas	Pancrea
27	chr14:65116200-65116400	Enhancers	Skeletal Muscle Female	skeletal muscle
28	chr14:65116200-65116400	Flanking Active TSS	HepG2	liver
29	chr14:65116200-65116600	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr14:65116200-65116600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
31	chr14:65116200-65116600	Enhancers	Primary neutrophils fromperipheralblood	blood
32	chr14:65116200-65116600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr14:65116200-65116600	Enhancers	Placenta Amnion	Placenta Amnion
34	chr14:65116200-65116600	Enhancers	NHDF-Ad	bronchial
35	chr14:65116200-65116600	Enhancers	NHLF	lung
36	chr14:65116200-65116800	Enhancers	H9 Cell Line	embryonic stem cell
37	chr14:65116200-65116800	Enhancers	iPS-20b Cell Line	embryonic stem cell
38	chr14:65116200-65116800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr14:65116200-65116800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr14:65116200-65116800	Bivalent Enhancer	Placenta	Placenta
41	chr14:65116200-65116800	Enhancers	Spleen	Spleen
42	chr14:65116200-65117000	Enhancers	HUES48 Cell Line	embryonic stem cell
43	chr14:65116200-65117000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr14:65116200-65117800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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